Experiment Information (Status: Released)

RBP	SRSF9
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	44

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Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SRSF9-1300	RBNS	20-20	1300	SRSF9_1300.fastq.gz
SRSF9-20	RBNS	20-20	20	SRSF9_20.fastq.gz
SRSF9-320	RBNS	20-20	320	SRSF9_320.fastq.gz
SRSF9-5	RBNS	20-20	5	SRSF9_5.fastq.gz
SRSF9-80	RBNS	20-20	80	SRSF9_80.fastq.gz
SRSF9-input	CN	20-20	0	SRSF9_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SRSF9	ENCSR724HZI	experiment	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-12	ENCODE3			8130
chris-burge:lib-SRSF9-1	ENCLB894MVN	library	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-12	ENCODE3			8576
chris-burge:lib-SRSF9-2	ENCLB233DTV	library	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-12	ENCODE3			8577
chris-burge:lib-SRSF9-3	ENCLB153GVL	library	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-12	ENCODE3			8578
chris-burge:lib-SRSF9-4	ENCLB200WOQ	library	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-12	ENCODE3			8579
chris-burge:lib-SRSF9-5	ENCLB585FDK	library	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-12	ENCODE3			8580
chris-burge:SRSF9_1300.fastq.gz	ENCFF042JZR	file_fastq	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			8969
chris-burge:SRSF9_20.fastq.gz	ENCFF413ETY	file_fastq	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			8970
chris-burge:SRSF9_320.fastq.gz	ENCFF305KBH	file_fastq	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			8971
chris-burge:SRSF9_5.fastq.gz	ENCFF927STX	file_fastq	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			8972
chris-burge:SRSF9_80.fastq.gz	ENCFF779KVV	file_fastq	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			8973
chris-burge:SRSF9_enrichment_R.4mers.txt	ENCFF081SZX	file_enrichment	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9501
chris-burge:SRSF9_enrichment_R.5mers.txt	ENCFF518QQO	file_enrichment	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9502
chris-burge:SRSF9_enrichment_R.6mers.txt	ENCFF808FRG	file_enrichment	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9503
chris-burge:SRSF9_enrichment_R.7mers.txt	ENCFF131QFS	file_enrichment	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9504
chris-burge:SRSF9_est_binding_frac.4mers.txt	ENCFF902PZM	file_library-fraction	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9505
chris-burge:SRSF9_est_binding_frac.5mers.txt	ENCFF930MUF	file_library-fraction	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9506
chris-burge:SRSF9_est_binding_frac.6mers.txt	ENCFF904PHM	file_library-fraction	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9507
chris-burge:SRSF9_est_binding_frac.7mers.txt	ENCFF434EMZ	file_library-fraction	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9508
chris-burge:HepG2.with_motif.SRSF9.bed.gz	ENCFF349NQV	file_bed	RNA Bind-n-Seq	SRSF9		Yes	Released	2022-07-14	ENCODE3			9747

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SRSF9.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF9_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
SRSF9_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
SRSF9_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
SRSF9_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
SRSF9_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		TARDBP_input.fastq.gz	ENCODE3
SRSF9_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SRSF9_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
SRSF9_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SRSF9_1300.fastq.gz,SRSF9_20.fastq.gz,SRSF9_320.fastq.gz,SRSF9_5.fastq.gz,SRSF9_80.fastq.gz,TARDBP_input.fastq.gz		ENCODE3
HepG2.with_motif.SRSF9.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	SRSF9_enrichment_R.5mers.txt,216.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3