ENCORE RBNS:SNRPA

SNRPA RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	SNRPA
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	94

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SNRPA-1300	RBNS	20-20	1300	SNRPA_1300.fastq.gz
SNRPA-20	RBNS	20-20	20	SNRPA_20.fastq.gz
SNRPA-320	RBNS	20-20	320	SNRPA_320.fastq.gz
SNRPA-5	RBNS	20-20	5	SNRPA_5.fastq.gz
SNRPA-80	RBNS	20-20	80	SNRPA_80.fastq.gz
SNRPA-input	CN	20-20	0	SNRPA_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SNRPA	ENCSR167ZZB	experiment	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-12	ENCODE3			8113
chris-burge:lib-SNRPA-1	ENCLB069XGH	library	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-12	ENCODE3			8531
chris-burge:lib-SNRPA-2	ENCLB046CVU	library	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-12	ENCODE3			8532
chris-burge:lib-SNRPA-3	ENCLB967OTI	library	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-12	ENCODE3			8533
chris-burge:lib-SNRPA-4	ENCLB426XKH	library	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-12	ENCODE3			8534
chris-burge:lib-SNRPA-5	ENCLB787RLT	library	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-12	ENCODE3			8535
chris-burge:SNRPA_1300.fastq.gz	ENCFF658HXU	file_fastq	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			8932
chris-burge:SNRPA_20.fastq.gz	ENCFF169FUR	file_fastq	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			8933
chris-burge:SNRPA_320.fastq.gz	ENCFF818QHZ	file_fastq	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			8934
chris-burge:SNRPA_5.fastq.gz	ENCFF279HZP	file_fastq	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			8935
chris-burge:SNRPA_80.fastq.gz	ENCFF729AXE	file_fastq	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			8936
chris-burge:SNRPA_enrichment_R.4mers.txt	ENCFF349ZGB	file_enrichment	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9453
chris-burge:SNRPA_enrichment_R.5mers.txt	ENCFF090VNK	file_enrichment	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9454
chris-burge:SNRPA_enrichment_R.6mers.txt	ENCFF625QSH	file_enrichment	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9455
chris-burge:SNRPA_enrichment_R.7mers.txt	ENCFF890AXZ	file_enrichment	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9456
chris-burge:SNRPA_est_binding_frac.4mers.txt	ENCFF262FUP	file_library-fraction	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9457
chris-burge:SNRPA_est_binding_frac.5mers.txt	ENCFF227ZZK	file_library-fraction	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9458
chris-burge:SNRPA_est_binding_frac.6mers.txt	ENCFF982SDF	file_library-fraction	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9459
chris-burge:SNRPA_est_binding_frac.7mers.txt	ENCFF958UPV	file_library-fraction	RNA Bind-n-Seq	SNRPA		Yes	Released	2022-07-14	ENCODE3			9460

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SNRPA.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SNRPA_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
SNRPA_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
SNRPA_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
SNRPA_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
SNRPA_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
SNRPA_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SNRPA_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
SNRPA_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SNRPA_1300.fastq.gz,SNRPA_20.fastq.gz,SNRPA_320.fastq.gz,SNRPA_5.fastq.gz,SNRPA_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3