Experiment Information (Status: Released)

RBP	SFPQ
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	42

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Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SFPQ-1300	RBNS	20-20	1300	SFPQ_1300.fastq.gz
SFPQ-20	RBNS	20-20	20	SFPQ_20.fastq.gz
SFPQ-320	RBNS	20-20	320	SFPQ_320.fastq.gz
SFPQ-5	RBNS	20-20	5	SFPQ_5.fastq.gz
SFPQ-80	RBNS	20-20	80	SFPQ_80.fastq.gz
SFPQ-input	CN	20-20	0	SFPQ_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SFPQ	ENCSR951YCV	experiment	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-12	ENCODE3			8112
chris-burge:lib-SFPQ-1	ENCLB662VSG	library	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-12	ENCODE3			8526
chris-burge:lib-SFPQ-2	ENCLB806SPY	library	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-12	ENCODE3			8527
chris-burge:lib-SFPQ-3	ENCLB439QEH	library	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-12	ENCODE3			8528
chris-burge:lib-SFPQ-4	ENCLB252DDO	library	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-12	ENCODE3			8529
chris-burge:lib-SFPQ-5	ENCLB124MSW	library	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-12	ENCODE3			8530
chris-burge:SFPQ_1300.fastq.gz	ENCFF597YAL	file_fastq	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			8927
chris-burge:SFPQ_20.fastq.gz	ENCFF980WQW	file_fastq	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			8928
chris-burge:SFPQ_320.fastq.gz	ENCFF642XCH	file_fastq	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			8929
chris-burge:SFPQ_5.fastq.gz	ENCFF092VIT	file_fastq	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			8930
chris-burge:SFPQ_80.fastq.gz	ENCFF852PPY	file_fastq	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			8931
chris-burge:SFPQ_enrichment_R.4mers.txt	ENCFF234GJL	file_enrichment	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9445
chris-burge:SFPQ_enrichment_R.5mers.txt	ENCFF890ORL	file_enrichment	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9446
chris-burge:SFPQ_enrichment_R.6mers.txt	ENCFF494LLV	file_enrichment	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9447
chris-burge:SFPQ_enrichment_R.7mers.txt	ENCFF360OVB	file_enrichment	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9448
chris-burge:SFPQ_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF702OTR	file_library-fraction	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9449
chris-burge:SFPQ_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF859JYQ	file_library-fraction	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9450
chris-burge:SFPQ_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF187CTW	file_library-fraction	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9451
chris-burge:SFPQ_est_binding_frac.7mers.ordered_by_enrichment.txt	ENCFF020VFS	file_library-fraction	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9452
chris-burge:HepG2.with_motif.SFPQ.bed.gz	ENCFF728KCD	file_bed	RNA Bind-n-Seq	SFPQ		Yes	Released	2022-07-14	ENCODE3			9746

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SFPQ.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
SFPQ_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
SFPQ_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
SFPQ_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
SFPQ_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
SFPQ_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
SFPQ_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
SFPQ_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
SFPQ_est_binding_frac.7mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SFPQ_1300.fastq.gz,SFPQ_20.fastq.gz,SFPQ_320.fastq.gz,SFPQ_5.fastq.gz,SFPQ_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
HepG2.with_motif.SFPQ.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	SFPQ_enrichment_R.5mers.txt,437.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3