Experiment Information (Status: Released)

RBP	SAFB2
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	21

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
SAFB2-1300	RBNS	20-20	1300	SAFB2_1300.fastq.gz
SAFB2-320	RBNS	20-20	320	SAFB2_320.fastq.gz
SAFB2-80	RBNS	20-20	80	SAFB2_80.fastq.gz
SAFB2-input	CN	20-20	0	SAFB2_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:SAFB2_ZRANB2-input-cntl	ENCSR537ATS	experiment	RNA Bind-n-Seq	SAFB2	ELAVL1-BGHcLV14-40	Yes	Released	2020-11-23	ENCODE4			1905
chris-burge:SAFB2	ENCSR558RBK	experiment	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			1906
chris-burge:lib-SAFB2-1	ENCLB651ENL	library	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			1933
chris-burge:lib-SAFB2-2	ENCLB477EOC	library	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-6	Yes	Released	2020-11-23	ENCODE4			1934
chris-burge:lib-SAFB2-3	ENCLB708TCW	library	RNA Bind-n-Seq	SAFB2	ELAVL1-BGHcLV14-39	Yes	Released	2020-11-23	ENCODE4			1935
chris-burge:lib-SAFB2_ZRANB2-input-cntl	ENCLB477FAG	library	RNA Bind-n-Seq	SAFB2	ELAVL1-BGHcLV14-40	Yes	Released	2020-11-23	ENCODE4			1936
chris-burge:SAFB2_1300.fastq.gz	ENCFF316BWJ	file_fastq	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			1989
chris-burge:SAFB2_320.fastq.gz	ENCFF632PPX	file_fastq	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-6	Yes	Released	2020-11-23	ENCODE4			1990
chris-burge:SAFB2_80.fastq.gz	ENCFF863XPB	file_fastq	RNA Bind-n-Seq	SAFB2	ELAVL1-BGHcLV14-39	Yes	Released	2020-11-23	ENCODE4			1991
chris-burge:SAFB2_input.fastq.gz	ENCFF479KPB	file_fastq	RNA Bind-n-Seq	SAFB2	ELAVL1-BGHcLV14-40	Yes	Released	2020-11-23	ENCODE4			1992
chris-burge:SAFB2_5mer_logo0.PWM	ENCFF671UIN	file_pwm	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			2015
chris-burge:SAFB2_6mer_logo0.PWM	ENCFF458NWK	file_pwm	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			2016
chris-burge:SAFB2_enrichment_R.4mers.mark_adapters.txt	ENCFF913VDL	file_enrichment	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			2056
chris-burge:SAFB2_enrichment_R.5mers.mark_adapters.txt	ENCFF747KCB	file_enrichment	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			2057
chris-burge:SAFB2_enrichment_R.6mers.mark_adapters.txt	ENCFF866ZOH	file_enrichment	RNA Bind-n-Seq	SAFB2	APEX1-BGHcLV14-5	Yes	Released	2020-11-23	ENCODE4			2058

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
SAFB2_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SAFB2_input.fastq.gz	ENCODE4
SAFB2_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SAFB2_input.fastq.gz	ENCODE4
SAFB2_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		SAFB2_input.fastq.gz	ENCODE4
SAFB2_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
SAFB2_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SAFB2_1300.fastq.gz,SAFB2_320.fastq.gz,SAFB2_80.fastq.gz,SAFB2_input.fastq.gz		ENCODE4
SAFB2_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SAFB2_1300.fastq.gz,SAFB2_320.fastq.gz,SAFB2_80.fastq.gz,SAFB2_input.fastq.gz		ENCODE4
SAFB2_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SAFB2_1300.fastq.gz,SAFB2_320.fastq.gz,SAFB2_80.fastq.gz,SAFB2_input.fastq.gz		ENCODE4
SAFB2_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SAFB2_1300.fastq.gz,SAFB2_320.fastq.gz,SAFB2_80.fastq.gz,SAFB2_input.fastq.gz		ENCODE4
SAFB2_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	SAFB2_1300.fastq.gz,SAFB2_320.fastq.gz,SAFB2_80.fastq.gz,SAFB2_input.fastq.gz		ENCODE4
SAFB2_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
SAFB2_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
SAFB2_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4