ENCORE RBNS:RBM5

RBM5 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	RBM5
gene_aliases
Status	Released
Status_date	2020-12-07
Project	ENCODE4
Note
ID	1

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM5-1300	RBNS	20-20	1300	RBM5_0nM_1300.fastq.gz
RBM5-5	RBNS	20-20	5	RBM5_0nM_5.fastq.gz
RBM5-80	RBNS	20-20	80	RBM5_0nM_80.fastq.gz
RBM5-input	CN	20-20	0	RBM5_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM5_TDRD10-input-cntl	ENCSR782ZXU	experiment	RNA Bind-n-Seq	RBM5	STAU2-BGKcLV11-102	Yes	Released	2020-11-23	ENCODE4			1710
chris-burge:RBM5	ENCSR345PWR	experiment	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1711
chris-burge:lib-RBM5-1300	ENCLB138CAF	library	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1730
chris-burge:lib-RBM5-5	ENCLB702CMS	library	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-96	Yes	Released	2020-11-23	ENCODE4			1731
chris-burge:lib-RBM5-80	ENCLB886MVO	library	RNA Bind-n-Seq	RBM5	STAU2-BGKcLV11-101	Yes	Released	2020-11-23	ENCODE4			1732
chris-burge:lib-RBM5-input	ENCLB075BKP	library	RNA Bind-n-Seq	RBM5	STAU2-BGKcLV11-102	Yes	Released	2020-11-23	ENCODE4			1733
chris-burge:RBM5_0nM_input.fastq.gz	ENCFF773UWT	file_fastq	RNA Bind-n-Seq	RBM5	STAU2-BGKcLV11-102	Yes	Released	2020-11-23	ENCODE4			1776
chris-burge:RBM5_0nM_1300.fastq.gz	ENCFF150UEU	file_fastq	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1783
chris-burge:RBM5_0nM_5.fastq.gz	ENCFF444DXH	file_fastq	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-96	Yes	Released	2020-11-23	ENCODE4			1784
chris-burge:RBM5_0nM_80.fastq.gz	ENCFF361NTW	file_fastq	RNA Bind-n-Seq	RBM5	STAU2-BGKcLV11-101	Yes	Released	2020-11-23	ENCODE4			1785
chris-burge:RBM5_0nM_6mer_logo0.PWM.txt	ENCFF797YXW	file_pwm	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1822
chris-burge:RBM5_0nM_6mer_logo1.PWM.txt	ENCFF675WZL	file_pwm	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1823
chris-burge:RBM5_0nM_enrichment_R.4mers.txt	ENCFF961RUA	file_enrichment	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1824
chris-burge:RBM5_0nM_enrichment_R.5mers.txt	ENCFF989HJA	file_enrichment	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1825
chris-burge:RBM5_0nM_enrichment_R.6mers.txt	ENCFF341CEM	file_enrichment	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1826
chris-burge:RBM5_0nM_enrichment_R.7mers.txt	ENCFF357IXX	file_enrichment	RNA Bind-n-Seq	RBM5	SRSF5-BGKcLV11-95	Yes	Released	2020-11-23	ENCODE4			1827

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM5_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM5_0nM_input.fastq.gz	ENCODE4
RBM5_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM5_0nM_input.fastq.gz	ENCODE4
RBM5_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM5_0nM_input.fastq.gz	ENCODE4
RBM5_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
RBM5_0nM_6mer_logo0.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM5_0nM_1300.fastq.gz,RBM5_0nM_5.fastq.gz,RBM5_0nM_80.fastq.gz,RBM5_0nM_input.fastq.gz		ENCODE4
RBM5_0nM_6mer_logo1.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM5_0nM_1300.fastq.gz,RBM5_0nM_5.fastq.gz,RBM5_0nM_80.fastq.gz,RBM5_0nM_input.fastq.gz		ENCODE4
RBM5_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM5_0nM_1300.fastq.gz,RBM5_0nM_5.fastq.gz,RBM5_0nM_80.fastq.gz,RBM5_0nM_input.fastq.gz		ENCODE4
RBM5_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM5_0nM_1300.fastq.gz,RBM5_0nM_5.fastq.gz,RBM5_0nM_80.fastq.gz,RBM5_0nM_input.fastq.gz		ENCODE4
RBM5_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM5_0nM_1300.fastq.gz,RBM5_0nM_5.fastq.gz,RBM5_0nM_80.fastq.gz,RBM5_0nM_input.fastq.gz		ENCODE4
RBM5_0nM_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM5_0nM_1300.fastq.gz,RBM5_0nM_5.fastq.gz,RBM5_0nM_80.fastq.gz,RBM5_0nM_input.fastq.gz		ENCODE4
RBM5_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
RBM5.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4