Experiment Information (Status: Released)

RBP	RBM47
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	25

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM47-mockPD	CN	40-40	0	RBM47_0.fastq.gz
RBM47-20	RBNS	40-40	20	RBM47_20.fastq.gz
RBM47-240	RBNS	40-40	240	RBM47_240.fastq.gz
RBM47-3800	RBNS	40-40	3800	RBM47_3800.fastq.gz
RBM47-5	RBNS	40-40	5	RBM47_5.fastq.gz
RBM47-60	RBNS	40-40	60	RBM47_60.fastq.gz
RBM47-960	RBNS	40-40	960	RBM47_960.fastq.gz
RBM47-input	CN	40-40	0	RBM47_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM47	ENCSR264RVK	experiment	RNA Bind-n-Seq	RBM47	ERO1L-BGKcLV15-47	Yes	Released	2022-07-12	ENCODE3			8098
chris-burge:RBM47-input-cntl	ENCSR903NNW	experiment	RNA Bind-n-Seq	RBM47	RPL28-BGKcLV15-53	Yes	Released	2022-07-12	ENCODE3			8099
chris-burge:RBM47-mockPD-cntl	ENCSR721BBI	experiment	RNA Bind-n-Seq	RBM47	NSUN4-BGKcLV15-44	Yes	Released	2022-07-12	ENCODE3			8100
chris-burge:lib-RBM47-1	ENCLB569CHU	library	RNA Bind-n-Seq	RBM47	PTGES3-BGKcLV15-50	Yes	Released	2022-07-12	ENCODE3			8480
chris-burge:lib-RBM47-2	ENCLB646OZS	library	RNA Bind-n-Seq	RBM47	ERO1L-BGKcLV15-47	Yes	Released	2022-07-12	ENCODE3			8481
chris-burge:lib-RBM47-3	ENCLB643KTB	library	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-51	Yes	Released	2022-07-12	ENCODE3			8482
chris-burge:lib-RBM47-4	ENCLB279EOM	library	RNA Bind-n-Seq	RBM47	ERO1L-BGKcLV15-48	Yes	Released	2022-07-12	ENCODE3			8483
chris-burge:lib-RBM47-5	ENCLB480OTB	library	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-12	ENCODE3			8484
chris-burge:lib-RBM47-6	ENCLB604UOQ	library	RNA Bind-n-Seq	RBM47	PTGES3-BGKcLV15-49	Yes	Released	2022-07-12	ENCODE3			8485
chris-burge:lib-RBM47-input-cntl	ENCLB782HCF	library	RNA Bind-n-Seq	RBM47	RPL28-BGKcLV15-53	Yes	Released	2022-07-12	ENCODE3			8486
chris-burge:lib-RBM47-mockPD-cntl	ENCLB803KUS	library	RNA Bind-n-Seq	RBM47	NSUN4-BGKcLV15-44	Yes	Released	2022-07-12	ENCODE3			8487
chris-burge:RBM47_0.fastq.gz	ENCFF654ZXW	file_fastq	RNA Bind-n-Seq	RBM47	NSUN4-BGKcLV15-44	Yes	Released	2022-07-14	ENCODE3			8881
chris-burge:RBM47_20.fastq.gz	ENCFF650UUT	file_fastq	RNA Bind-n-Seq	RBM47	ERO1L-BGKcLV15-47	Yes	Released	2022-07-14	ENCODE3			8882
chris-burge:RBM47_240.fastq.gz	ENCFF051CMM	file_fastq	RNA Bind-n-Seq	RBM47	ERO1L-BGKcLV15-48	Yes	Released	2022-07-14	ENCODE3			8883
chris-burge:RBM47_3800.fastq.gz	ENCFF211NKK	file_fastq	RNA Bind-n-Seq	RBM47	PTGES3-BGKcLV15-49	Yes	Released	2022-07-14	ENCODE3			8884
chris-burge:RBM47_5.fastq.gz	ENCFF546CET	file_fastq	RNA Bind-n-Seq	RBM47	PTGES3-BGKcLV15-50	Yes	Released	2022-07-14	ENCODE3			8885
chris-burge:RBM47_60.fastq.gz	ENCFF152YBN	file_fastq	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-51	Yes	Released	2022-07-14	ENCODE3			8886
chris-burge:RBM47_960.fastq.gz	ENCFF753GNQ	file_fastq	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			8887
chris-burge:RBM47_input.fastq.gz	ENCFF148TFJ	file_fastq	RNA Bind-n-Seq	RBM47	RPL28-BGKcLV15-53	Yes	Released	2022-07-14	ENCODE3			8888
chris-burge:RBM47_enrichment_R.4mers.txt	ENCFF639XVL	file_enrichment	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9381
chris-burge:RBM47_enrichment_R.5mers.txt	ENCFF953ZVW	file_enrichment	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9382
chris-burge:RBM47_enrichment_R.6mers.txt	ENCFF063VIP	file_enrichment	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9383
chris-burge:RBM47_enrichment_R.7mers.txt	ENCFF995ECH	file_enrichment	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9384
chris-burge:RBM47_est_binding_frac.4mers.txt	ENCFF689ZBZ	file_library-fraction	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9385
chris-burge:RBM47_est_binding_frac.5mers.txt	ENCFF309STS	file_library-fraction	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9386
chris-burge:RBM47_est_binding_frac.6mers.txt	ENCFF124DAS	file_library-fraction	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9387
chris-burge:RBM47_est_binding_frac.7mers.txt	ENCFF034WGD	file_library-fraction	RNA Bind-n-Seq	RBM47	RPL11-BGKcLV15-52	Yes	Released	2022-07-14	ENCODE3			9388

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM47.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM47_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM47_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM47_0.fastq.gz,RBM47_input.fastq.gz	ENCODE3
RBM47_240.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM47_0.fastq.gz,RBM47_input.fastq.gz	ENCODE3
RBM47_3800.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM47_0.fastq.gz,RBM47_input.fastq.gz	ENCODE3
RBM47_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM47_0.fastq.gz,RBM47_input.fastq.gz	ENCODE3
RBM47_60.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM47_0.fastq.gz,RBM47_input.fastq.gz	ENCODE3
RBM47_960.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM47_0.fastq.gz,RBM47_input.fastq.gz	ENCODE3
RBM47_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM47_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3
RBM47_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM47_0.fastq.gz,RBM47_20.fastq.gz,RBM47_240.fastq.gz,RBM47_3800.fastq.gz,RBM47_5.fastq.gz,RBM47_60.fastq.gz,RBM47_960.fastq.gz,RBM47_input.fastq.gz		ENCODE3