ENCORE RBNS:RBM3

RBM3 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	RBM3
gene_aliases
Status	Released
Status_date	2020-12-07
Project	ENCODE4
Note
ID	7

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM3-1300	RBNS	20-20	1300	RBM3_0nM_1300.fastq.gz
RBM3-5	RBNS	20-20	5	RBM3_0nM_5.fastq.gz
RBM3-80	RBNS	20-20	80	RBM3_0nM_80.fastq.gz
RBM3-input	CN	20-20	0	RBM3_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM3-input-cntl	ENCSR086YTW	experiment	RNA Bind-n-Seq	RBM3	SF3B1-BGKcLV11-94	Yes	Released	2020-11-23	ENCODE4			1721
chris-burge:RBM3	ENCSR379HWF	experiment	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1722
chris-burge:lib-RBM3-1300	ENCLB401JTA	library	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1751
chris-burge:lib-RBM3-5	ENCLB952HAO	library	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-90	Yes	Released	2020-11-23	ENCODE4			1752
chris-burge:lib-RBM3-80	ENCLB566ODN	library	RNA Bind-n-Seq	RBM3	SF3B1-BGKcLV11-93	Yes	Released	2020-11-23	ENCODE4			1753
chris-burge:lib-RBM3-input	ENCLB835YYC	library	RNA Bind-n-Seq	RBM3	SF3B1-BGKcLV11-94	Yes	Released	2020-11-23	ENCODE4			1754
chris-burge:RBM3_0nM_input.fastq.gz	ENCFF864GIN	file_fastq	RNA Bind-n-Seq	RBM3	SF3B1-BGKcLV11-94	Yes	Released	2020-11-23	ENCODE4			1779
chris-burge:RBM3_0nM_1300.fastq.gz	ENCFF745PBS	file_fastq	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1801
chris-burge:RBM3_0nM_5.fastq.gz	ENCFF576KOI	file_fastq	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-90	Yes	Released	2020-11-23	ENCODE4			1802
chris-burge:RBM3_0nM_80.fastq.gz	ENCFF809IFX	file_fastq	RNA Bind-n-Seq	RBM3	SF3B1-BGKcLV11-93	Yes	Released	2020-11-23	ENCODE4			1803
chris-burge:RBM3_0nM_6mer_logo0.PWM.txt	ENCFF819XJK	file_pwm	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1858
chris-burge:RBM3_0nM_enrichment_R.4mers.txt	ENCFF915WEK	file_enrichment	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1859
chris-burge:RBM3_0nM_enrichment_R.5mers.txt	ENCFF079HPJ	file_enrichment	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1860
chris-burge:RBM3_0nM_enrichment_R.6mers.txt	ENCFF814UBS	file_enrichment	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1861
chris-burge:RBM3_0nM_enrichment_R.7mers.txt	ENCFF863IMN	file_enrichment	RNA Bind-n-Seq	RBM3	RPLP0-BGKcLV11-89	Yes	Released	2020-11-23	ENCODE4			1862

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM3_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM3_0nM_input.fastq.gz	ENCODE4
RBM3_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM3_0nM_input.fastq.gz	ENCODE4
RBM3_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM3_0nM_input.fastq.gz	ENCODE4
RBM3_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
RBM3_0nM_6mer_logo0.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM3_0nM_1300.fastq.gz,RBM3_0nM_5.fastq.gz,RBM3_0nM_80.fastq.gz,RBM3_0nM_input.fastq.gz		ENCODE4
RBM3_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM3_0nM_1300.fastq.gz,RBM3_0nM_5.fastq.gz,RBM3_0nM_80.fastq.gz,RBM3_0nM_input.fastq.gz		ENCODE4
RBM3_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM3_0nM_1300.fastq.gz,RBM3_0nM_5.fastq.gz,RBM3_0nM_80.fastq.gz,RBM3_0nM_input.fastq.gz		ENCODE4
RBM3_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM3_0nM_1300.fastq.gz,RBM3_0nM_5.fastq.gz,RBM3_0nM_80.fastq.gz,RBM3_0nM_input.fastq.gz		ENCODE4
RBM3_0nM_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM3_0nM_1300.fastq.gz,RBM3_0nM_5.fastq.gz,RBM3_0nM_80.fastq.gz,RBM3_0nM_input.fastq.gz		ENCODE4
RBM3_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
RBM3.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4