Experiment Information (Status: Released)

RBP	RBM25
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	52

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM25-1300	RBNS	20-20	1300	RBM25_1300.fastq.gz
RBM25-20	RBNS	20-20	20	RBM25_20.fastq.gz
RBM25-320	RBNS	20-20	320	RBM25_320.fastq.gz
RBM25-5	RBNS	20-20	5	RBM25_5.fastq.gz
RBM25-80	RBNS	20-20	80	RBM25_80.fastq.gz
RBM25-input	CN	20-20	0	RBM25_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM25	ENCSR759QKO	experiment	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8092
chris-burge:RBM25-input-cntl	ENCSR391IGH	experiment	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8093
chris-burge:lib-RBM25-1	ENCLB211EBS	library	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8458
chris-burge:lib-RBM25-2	ENCLB491JRI	library	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8459
chris-burge:lib-RBM25-3	ENCLB011QRZ	library	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8460
chris-burge:lib-RBM25-4	ENCLB347TBD	library	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8461
chris-burge:lib-RBM25-5	ENCLB309CDG	library	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8462
chris-burge:lib-RBM25-input-cntl	ENCLB241FLB	library	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-12	ENCODE3			8463
chris-burge:RBM25_1300.fastq.gz	ENCFF353VKL	file_fastq	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			8859
chris-burge:RBM25_20.fastq.gz	ENCFF701SYD	file_fastq	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			8860
chris-burge:RBM25_320.fastq.gz	ENCFF897ZRK	file_fastq	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			8861
chris-burge:RBM25_5.fastq.gz	ENCFF066NPP	file_fastq	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			8862
chris-burge:RBM25_80.fastq.gz	ENCFF410QTN	file_fastq	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			8863
chris-burge:RBM25_input.fastq.gz	ENCFF248GRF	file_fastq	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			8864
chris-burge:RBM25_enrichment_R.4mers.txt	ENCFF485TKI	file_enrichment	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9349
chris-burge:RBM25_enrichment_R.5mers.txt	ENCFF872SLK	file_enrichment	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9350
chris-burge:RBM25_enrichment_R.6mers.txt	ENCFF170PGF	file_enrichment	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9351
chris-burge:RBM25_enrichment_R.7mers.txt	ENCFF135TEV	file_enrichment	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9352
chris-burge:RBM25_est_binding_frac.4mers.txt	ENCFF713WFE	file_library-fraction	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9353
chris-burge:RBM25_est_binding_frac.5mers.txt	ENCFF514QXS	file_library-fraction	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9354
chris-burge:RBM25_est_binding_frac.6mers.txt	ENCFF556OQE	file_library-fraction	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9355
chris-burge:RBM25_est_binding_frac.7mers.txt	ENCFF252CDY	file_library-fraction	RNA Bind-n-Seq	RBM25		Yes	Released	2022-07-14	ENCODE3			9356

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM25.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM25_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM25_input.fastq.gz	ENCODE3
RBM25_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM25_input.fastq.gz	ENCODE3
RBM25_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM25_input.fastq.gz	ENCODE3
RBM25_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM25_input.fastq.gz	ENCODE3
RBM25_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM25_input.fastq.gz	ENCODE3
RBM25_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM25_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3
RBM25_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM25_1300.fastq.gz,RBM25_20.fastq.gz,RBM25_320.fastq.gz,RBM25_5.fastq.gz,RBM25_80.fastq.gz,RBM25_input.fastq.gz		ENCODE3