Experiment Information (Status: Released)

RBP	RBM22
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	33

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
RBM22-1300	RBNS	20-20	1300	RBM22_1300.fastq.gz
RBM22-20	RBNS	20-20	20	RBM22_20.fastq.gz
RBM22-320	RBNS	20-20	320	RBM22_320.fastq.gz
RBM22-5	RBNS	20-20	5	RBM22_5.fastq.gz
RBM22-80	RBNS	20-20	80	RBM22_80.fastq.gz
RBM22-input	CN	20-20	0	RBM22_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:RBM22	ENCSR006TPX	experiment	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8086
chris-burge:RBM22-input-cntl	ENCSR192FWS	experiment	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8087
chris-burge:lib-RBM22-1	ENCLB787FCS	library	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8440
chris-burge:lib-RBM22-2	ENCLB368BXE	library	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8441
chris-burge:lib-RBM22-3	ENCLB624SWY	library	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8442
chris-burge:lib-RBM22-4	ENCLB906KZQ	library	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8443
chris-burge:lib-RBM22-5	ENCLB989BZL	library	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8444
chris-burge:lib-RBM22-input-cntl	ENCLB455EWU	library	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-12	ENCODE3			8445
chris-burge:RBM22_1300.fastq.gz	ENCFF222JFA	file_fastq	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			8841
chris-burge:RBM22_20.fastq.gz	ENCFF745RRQ	file_fastq	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			8842
chris-burge:RBM22_320.fastq.gz	ENCFF576DJF	file_fastq	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			8843
chris-burge:RBM22_5.fastq.gz	ENCFF518QQN	file_fastq	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			8844
chris-burge:RBM22_80.fastq.gz	ENCFF870LSB	file_fastq	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			8845
chris-burge:RBM22_input.fastq.gz	ENCFF767MZQ	file_fastq	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			8846
chris-burge:RBM22_enrichment_R.4mers.txt	ENCFF179SVM	file_enrichment	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9327
chris-burge:RBM22_enrichment_R.5mers.txt	ENCFF688EDA	file_enrichment	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9328
chris-burge:RBM22_enrichment_R.6mers.txt	ENCFF106RWF	file_enrichment	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9329
chris-burge:RBM22_enrichment_R.7mers.txt	ENCFF581IOZ	file_enrichment	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9330
chris-burge:RBM22_est_binding_frac.4mers.txt	ENCFF488JCO	file_library-fraction	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9331
chris-burge:RBM22_est_binding_frac.5mers.txt	ENCFF686ABH	file_library-fraction	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9332
chris-burge:RBM22_est_binding_frac.6mers.txt	ENCFF708MRW	file_library-fraction	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9333
chris-burge:RBM22_est_binding_frac.7mers.txt	ENCFF849UTP	file_library-fraction	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9334
chris-burge:HepG2.with_motif.RBM22.bed.gz	ENCFF293KBP	file_bed	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9744
chris-burge:K562.with_motif.RBM22.bed.gz	ENCFF864NMG	file_bed	RNA Bind-n-Seq	RBM22		Yes	Released	2022-07-14	ENCODE3			9745

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
RBM22_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
RBM22.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM22_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM22_input.fastq.gz	ENCODE3
RBM22_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM22_input.fastq.gz	ENCODE3
RBM22_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM22_input.fastq.gz	ENCODE3
RBM22_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM22_input.fastq.gz	ENCODE3
RBM22_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		RBM22_input.fastq.gz	ENCODE3
RBM22_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
RBM22_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
RBM22_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	RBM22_1300.fastq.gz,RBM22_20.fastq.gz,RBM22_320.fastq.gz,RBM22_5.fastq.gz,RBM22_80.fastq.gz,RBM22_input.fastq.gz		ENCODE3
K562.with_motif.RBM22.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	RBM22_enrichment_R.5mers.txt,331.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
HepG2.with_motif.RBM22.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	RBM22_enrichment_R.5mers.txt,494.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3