Experiment Information (Status: Released)

RBP	PUM1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	65

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PUM1-1300	RBNS	20-20	1300	PUM1_1300.fastq.gz
PUM1-20	RBNS	20-20	20	PUM1_20.fastq.gz
PUM1-320	RBNS	20-20	320	PUM1_320.fastq.gz
PUM1-5	RBNS	20-20	5	PUM1_5.fastq.gz
PUM1-80	RBNS	20-20	80	PUM1_80.fastq.gz
PUM1-input	CN	20-20	0	PUM1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PUM1	ENCSR845GNW	experiment	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8076
chris-burge:PUM1-input-cntl	ENCSR025XWZ	experiment	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8077
chris-burge:lib-PUM1-1	ENCLB148HHP	library	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8407
chris-burge:lib-PUM1-2	ENCLB682RQQ	library	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8408
chris-burge:lib-PUM1-3	ENCLB946GCU	library	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8409
chris-burge:lib-PUM1-4	ENCLB066JEM	library	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8410
chris-burge:lib-PUM1-5	ENCLB459BYF	library	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8411
chris-burge:lib-PUM1-input-cntl	ENCLB063XHV	library	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-12	ENCODE3			8412
chris-burge:PUM1_1300.fastq.gz	ENCFF345UJY	file_fastq	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			8819
chris-burge:PUM1_20.fastq.gz	ENCFF090QVU	file_fastq	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			8820
chris-burge:PUM1_320.fastq.gz	ENCFF266PHU	file_fastq	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			8821
chris-burge:PUM1_5.fastq.gz	ENCFF894MLG	file_fastq	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			8822
chris-burge:PUM1_80.fastq.gz	ENCFF574TBN	file_fastq	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			8823
chris-burge:PUM1_input.fastq.gz	ENCFF761JAF	file_fastq	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			8824
chris-burge:PUM1_enrichment_R.4mers.txt	ENCFF519SMF	file_enrichment	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9295
chris-burge:PUM1_enrichment_R.5mers.txt	ENCFF056YLH	file_enrichment	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9296
chris-burge:PUM1_enrichment_R.6mers.txt	ENCFF966LVC	file_enrichment	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9297
chris-burge:PUM1_enrichment_R.7mers.txt	ENCFF031GWM	file_enrichment	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9298
chris-burge:PUM1_est_binding_frac.4mers.txt	ENCFF955ZGE	file_library-fraction	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9299
chris-burge:PUM1_est_binding_frac.5mers.txt	ENCFF704EBI	file_library-fraction	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9300
chris-burge:PUM1_est_binding_frac.6mers.txt	ENCFF537LES	file_library-fraction	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9301
chris-burge:PUM1_est_binding_frac.7mers.txt	ENCFF400IBT	file_library-fraction	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9302
chris-burge:K562.with_motif.PUM1.bed.gz	ENCFF648TBV	file_bed	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9738
chris-burge:K562.with_motif.PUM2.bed.gz	ENCFF126IQM	file_bed	RNA Bind-n-Seq	PUM1		Yes	Released	2022-07-14	ENCODE3			9739

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PUM1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PUM1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUM1_input.fastq.gz	ENCODE3
PUM1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUM1_input.fastq.gz	ENCODE3
PUM1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUM1_input.fastq.gz	ENCODE3
PUM1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUM1_input.fastq.gz	ENCODE3
PUM1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUM1_input.fastq.gz	ENCODE3
PUM1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PUM1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
PUM1_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUM1_1300.fastq.gz,PUM1_20.fastq.gz,PUM1_320.fastq.gz,PUM1_5.fastq.gz,PUM1_80.fastq.gz,PUM1_input.fastq.gz		ENCODE3
K562.with_motif.PUM2.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PUM1_enrichment_R.5mers.txt,441.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.PUM1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PUM1_enrichment_R.5mers.txt,690.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3