Experiment Information (Status: Released)

RBP	PUF60
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	57

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PUF60-mockPD	CN	20-20	0	PUF60_0.fastq.gz
PUF60-1300	RBNS	20-20	1300	PUF60_1300.fastq.gz
PUF60-20	RBNS	20-20	20	PUF60_20.fastq.gz
PUF60-320	RBNS	20-20	320	PUF60_320.fastq.gz
PUF60-5	RBNS	20-20	5	PUF60_5.fastq.gz
PUF60-80	RBNS	20-20	80	PUF60_80.fastq.gz
PUF60-input	CN	20-20	0	PUF60_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PUF60	ENCSR773QCC	experiment	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-12	ENCODE3			8073
chris-burge:PUF60-input-cntl	ENCSR474BVN	experiment	RNA Bind-n-Seq	PUF60	CD3EAP-BGKcLV15-9	Yes	Released	2022-07-12	ENCODE3			8074
chris-burge:PUF60-mockPD-cntl	ENCSR894MDU	experiment	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-12	ENCODE3			8075
chris-burge:lib-PUF60-1	ENCLB082DDM	library	RNA Bind-n-Seq	PUF60	NT-BGKcLV15-1	Yes	Released	2022-07-12	ENCODE3			8400
chris-burge:lib-PUF60-2	ENCLB674QME	library	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-12	ENCODE3			8401
chris-burge:lib-PUF60-3	ENCLB689FAA	library	RNA Bind-n-Seq	PUF60	NT-BGKcLV15-2	Yes	Released	2022-07-12	ENCODE3			8402
chris-burge:lib-PUF60-4	ENCLB129AQO	library	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-12	ENCODE3			8403
chris-burge:lib-PUF60-5	ENCLB390DID	library	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-12	ENCODE3			8404
chris-burge:lib-PUF60-input-cntl	ENCLB452WWR	library	RNA Bind-n-Seq	PUF60	CD3EAP-BGKcLV15-9	Yes	Released	2022-07-12	ENCODE3			8405
chris-burge:lib-PUF60-mockPD-cntl	ENCLB278OFL	library	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-12	ENCODE3			8406
chris-burge:PUF60_0.fastq.gz	ENCFF147YOV	file_fastq	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			8812
chris-burge:PUF60_1300.fastq.gz	ENCFF838ARR	file_fastq	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			8813
chris-burge:PUF60_20.fastq.gz	ENCFF262OPY	file_fastq	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			8814
chris-burge:PUF60_320.fastq.gz	ENCFF071TXE	file_fastq	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			8815
chris-burge:PUF60_5.fastq.gz	ENCFF092OVI	file_fastq	RNA Bind-n-Seq	PUF60	NT-BGKcLV15-1	Yes	Released	2022-07-14	ENCODE3			8816
chris-burge:PUF60_80.fastq.gz	ENCFF748VRH	file_fastq	RNA Bind-n-Seq	PUF60	NT-BGKcLV15-2	Yes	Released	2022-07-14	ENCODE3			8817
chris-burge:PUF60_input.fastq.gz	ENCFF871MJA	file_fastq	RNA Bind-n-Seq	PUF60	CD3EAP-BGKcLV15-9	Yes	Released	2022-07-14	ENCODE3			8818
chris-burge:PUF60_enrichment_R.4mers.txt	ENCFF146LBG	file_enrichment	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			9289
chris-burge:PUF60_enrichment_R.5mers.txt	ENCFF619SGN	file_enrichment	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			9290
chris-burge:PUF60_enrichment_R.6mers.txt	ENCFF631TWR	file_enrichment	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			9291
chris-burge:PUF60_est_binding_frac.4mers.txt	ENCFF608KZB	file_library-fraction	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			9292
chris-burge:PUF60_est_binding_frac.5mers.txt	ENCFF180NZG	file_library-fraction	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			9293
chris-burge:PUF60_est_binding_frac.6mers.txt	ENCFF582QKC	file_library-fraction	RNA Bind-n-Seq	PUF60		Yes	Released	2022-07-14	ENCODE3			9294

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PUF60.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PUF60_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PUF60_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUF60_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
PUF60_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUF60_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
PUF60_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUF60_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
PUF60_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUF60_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
PUF60_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PUF60_0.fastq.gz,PUF60_input.fastq.gz	ENCODE3
PUF60_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PUF60_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUF60_0.fastq.gz,PUF60_1300.fastq.gz,PUF60_20.fastq.gz,PUF60_320.fastq.gz,PUF60_5.fastq.gz,PUF60_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
PUF60_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUF60_0.fastq.gz,PUF60_1300.fastq.gz,PUF60_20.fastq.gz,PUF60_320.fastq.gz,PUF60_5.fastq.gz,PUF60_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
PUF60_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUF60_0.fastq.gz,PUF60_1300.fastq.gz,PUF60_20.fastq.gz,PUF60_320.fastq.gz,PUF60_5.fastq.gz,PUF60_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
PUF60_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUF60_0.fastq.gz,PUF60_1300.fastq.gz,PUF60_20.fastq.gz,PUF60_320.fastq.gz,PUF60_5.fastq.gz,PUF60_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
PUF60_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUF60_0.fastq.gz,PUF60_1300.fastq.gz,PUF60_20.fastq.gz,PUF60_320.fastq.gz,PUF60_5.fastq.gz,PUF60_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3
PUF60_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PUF60_0.fastq.gz,PUF60_1300.fastq.gz,PUF60_20.fastq.gz,PUF60_320.fastq.gz,PUF60_5.fastq.gz,PUF60_80.fastq.gz,PUF60_input.fastq.gz		ENCODE3