ENCORE RBNS:PPP1R10

PPP1R10 RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	PPP1R10
gene_aliases
Status	Released
Status_date	2020-12-07
Project	ENCODE4
Note
ID	8

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PPP1R10-1300	RBNS	20-20	1300	PPP1R10_0nM_1300.fastq.gz
PPP1R10-5	RBNS	20-20	5	PPP1R10_0nM_5.fastq.gz
PPP1R10-80	RBNS	20-20	80	PPP1R10_0nM_80.fastq.gz
PPP1R10-input	CN	20-20	0	PPP1R10_0nM_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PPP1R10_ZC3H18-input-cntl	ENCSR429WJF	experiment	RNA Bind-n-Seq	PPP1R10	NIP7-BGKcLV11-68	Yes	Released	2020-11-23	ENCODE4			1716
chris-burge:PPP1R10	ENCSR297UTH	experiment	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1723
chris-burge:lib-PPP1R10-1300	ENCLB286SBF	library	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1755
chris-burge:lib-PPP1R10-5	ENCLB367BVN	library	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-62	Yes	Released	2020-11-23	ENCODE4			1756
chris-burge:lib-PPP1R10-80	ENCLB629BEJ	library	RNA Bind-n-Seq	PPP1R10	NIP7-BGKcLV11-67	Yes	Released	2020-11-23	ENCODE4			1757
chris-burge:lib-PPP1R10-input	ENCLB800BOC	library	RNA Bind-n-Seq	PPP1R10	NIP7-BGKcLV11-68	Yes	Released	2020-11-23	ENCODE4			1758
chris-burge:PPP1R10_0nM_input.fastq.gz	ENCFF647VIQ	file_fastq	RNA Bind-n-Seq	PPP1R10	NIP7-BGKcLV11-68	Yes	Released	2020-11-23	ENCODE4			1780
chris-burge:PPP1R10_0nM_1300.fastq.gz	ENCFF514BCR	file_fastq	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1804
chris-burge:PPP1R10_0nM_5.fastq.gz	ENCFF943XFG	file_fastq	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-62	Yes	Released	2020-11-23	ENCODE4			1805
chris-burge:PPP1R10_0nM_80.fastq.gz	ENCFF005JOX	file_fastq	RNA Bind-n-Seq	PPP1R10	NIP7-BGKcLV11-67	Yes	Released	2020-11-23	ENCODE4			1806
chris-burge:PPP1R10_0nM_6mer_logo0.PWM.txt	ENCFF794XEZ	file_pwm	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1863
chris-burge:PPP1R10_0nM_6mer_logo1.PWM.txt	ENCFF189BHW	file_pwm	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1864
chris-burge:PPP1R10_0nM_enrichment_R.4mers.txt	ENCFF389PPC	file_enrichment	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1865
chris-burge:PPP1R10_0nM_enrichment_R.5mers.txt	ENCFF242VUG	file_enrichment	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1866
chris-burge:PPP1R10_0nM_enrichment_R.6mers.txt	ENCFF669QAC	file_enrichment	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1867
chris-burge:PPP1R10_0nM_enrichment_R.7mers.txt	ENCFF278ECV	file_enrichment	RNA Bind-n-Seq	PPP1R10	NCBP1-BGKcLV11-61	Yes	Released	2020-11-23	ENCODE4			1868

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PPP1R10_0nM_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PPP1R10_0nM_input.fastq.gz	ENCODE4
PPP1R10_0nM_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PPP1R10_0nM_input.fastq.gz	ENCODE4
PPP1R10_0nM_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PPP1R10_0nM_input.fastq.gz	ENCODE4
PPP1R10_0nM_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
PPP1R10_0nM_6mer_logo0.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PPP1R10_0nM_1300.fastq.gz,PPP1R10_0nM_5.fastq.gz,PPP1R10_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
PPP1R10_0nM_6mer_logo1.PWM.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PPP1R10_0nM_1300.fastq.gz,PPP1R10_0nM_5.fastq.gz,PPP1R10_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
PPP1R10_0nM_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PPP1R10_0nM_1300.fastq.gz,PPP1R10_0nM_5.fastq.gz,PPP1R10_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
PPP1R10_0nM_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PPP1R10_0nM_1300.fastq.gz,PPP1R10_0nM_5.fastq.gz,PPP1R10_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
PPP1R10_0nM_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PPP1R10_0nM_1300.fastq.gz,PPP1R10_0nM_5.fastq.gz,PPP1R10_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
PPP1R10_0nM_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PPP1R10_0nM_1300.fastq.gz,PPP1R10_0nM_5.fastq.gz,PPP1R10_0nM_80.fastq.gz,PPP1R10_0nM_input.fastq.gz		ENCODE4
PPP1R10_0nM_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
PPP1R10.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4