Experiment Information (Status: Released)

RBP	PCBP4
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	66

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PCBP4-1300	RBNS	20-20	1300	PCBP4_1300.fastq.gz
PCBP4-20	RBNS	20-20	20	PCBP4_20.fastq.gz
PCBP4-320	RBNS	20-20	320	PCBP4_320.fastq.gz
PCBP4-5	RBNS	20-20	5	PCBP4_5.fastq.gz
PCBP4-80	RBNS	20-20	80	PCBP4_80.fastq.gz
PCBP4-input	CN	20-20	0	PCBP4_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PCBP4	ENCSR769AEI	experiment	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8068
chris-burge:PCBP4-input-cntl	ENCSR548MAW	experiment	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8069
chris-burge:lib-PCBP4-1	ENCLB694WZT	library	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8382
chris-burge:lib-PCBP4-2	ENCLB793AWS	library	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8383
chris-burge:lib-PCBP4-3	ENCLB067QJE	library	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8384
chris-burge:lib-PCBP4-4	ENCLB025EOW	library	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8385
chris-burge:lib-PCBP4-5	ENCLB360NJH	library	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8386
chris-burge:lib-PCBP4-input-cntl	ENCLB046MDB	library	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-12	ENCODE3			8387
chris-burge:PCBP4_1300.fastq.gz	ENCFF814SIC	file_fastq	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			8801
chris-burge:PCBP4_20.fastq.gz	ENCFF024KDW	file_fastq	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			8802
chris-burge:PCBP4_320.fastq.gz	ENCFF065MZA	file_fastq	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			8803
chris-burge:PCBP4_5.fastq.gz	ENCFF922HKT	file_fastq	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			8804
chris-burge:PCBP4_80.fastq.gz	ENCFF871CCW	file_fastq	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			8805
chris-burge:PCBP4_input.fastq.gz	ENCFF519RUA	file_fastq	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			8806
chris-burge:PCBP4_enrichment_R.4mers.txt	ENCFF661CYO	file_enrichment	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9270
chris-burge:PCBP4_enrichment_R.5mers.txt	ENCFF536CUG	file_enrichment	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9271
chris-burge:PCBP4_enrichment_R.6mers.txt	ENCFF239XFN	file_enrichment	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9272
chris-burge:PCBP4_enrichment_R.7mers.txt	ENCFF549QKX	file_enrichment	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9273
chris-burge:PCBP4_est_binding_frac.4mers.txt	ENCFF005EAZ	file_library-fraction	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9274
chris-burge:PCBP4_est_binding_frac.5mers.txt	ENCFF844KLM	file_library-fraction	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9275
chris-burge:PCBP4_est_binding_frac.6mers.txt	ENCFF780YHK	file_library-fraction	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9276
chris-burge:PCBP4_est_binding_frac.7mers.txt	ENCFF305FFO	file_library-fraction	RNA Bind-n-Seq	PCBP4		Yes	Released	2022-07-14	ENCODE3			9277

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PCBP4_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
PCBP4.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PCBP4_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP4_input.fastq.gz	ENCODE3
PCBP4_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP4_input.fastq.gz	ENCODE3
PCBP4_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP4_input.fastq.gz	ENCODE3
PCBP4_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP4_input.fastq.gz	ENCODE3
PCBP4_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP4_input.fastq.gz	ENCODE3
PCBP4_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PCBP4_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3
PCBP4_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP4_1300.fastq.gz,PCBP4_20.fastq.gz,PCBP4_320.fastq.gz,PCBP4_5.fastq.gz,PCBP4_80.fastq.gz,PCBP4_input.fastq.gz		ENCODE3