Experiment Information (Status: Released)

RBP	PCBP2
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	35

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PCBP2-1300	RBNS	20-20	1300	PCBP2_1300.fastq.gz
PCBP2-20	RBNS	20-20	20	PCBP2_20.fastq.gz
PCBP2-320	RBNS	20-20	320	PCBP2_320.fastq.gz
PCBP2-5	RBNS	20-20	5	PCBP2_5.fastq.gz
PCBP2-80	RBNS	20-20	80	PCBP2_80.fastq.gz
PCBP2-input	CN	20-20	0	PCBP2_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PCBP2	ENCSR673FLQ	experiment	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8066
chris-burge:PCBP2_SFPQ-input-cntl	ENCSR265XUT	experiment	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8067
chris-burge:lib-PCBP2-1	ENCLB826IRY	library	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8376
chris-burge:lib-PCBP2-2	ENCLB363GZZ	library	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8377
chris-burge:lib-PCBP2-3	ENCLB150FCY	library	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8378
chris-burge:lib-PCBP2-4	ENCLB780WAH	library	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8379
chris-burge:lib-PCBP2-5	ENCLB381OMZ	library	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8380
chris-burge:lib-PCBP2-input-cntl	ENCLB402EVZ	library	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-12	ENCODE3			8381
chris-burge:PCBP2_1300.fastq.gz	ENCFF020KTF	file_fastq	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			8795
chris-burge:PCBP2_20.fastq.gz	ENCFF058WPN	file_fastq	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			8796
chris-burge:PCBP2_320.fastq.gz	ENCFF053JNP	file_fastq	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			8797
chris-burge:PCBP2_5.fastq.gz	ENCFF798SMM	file_fastq	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			8798
chris-burge:PCBP2_80.fastq.gz	ENCFF691SCA	file_fastq	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			8799
chris-burge:PCBP2_input.fastq.gz	ENCFF816DFV	file_fastq	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			8800
chris-burge:PCBP2_enrichment_R.4mers.txt	ENCFF908FAV	file_enrichment	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9262
chris-burge:PCBP2_enrichment_R.5mers.txt	ENCFF761GIK	file_enrichment	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9263
chris-burge:PCBP2_enrichment_R.6mers.txt	ENCFF024ODR	file_enrichment	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9264
chris-burge:PCBP2_enrichment_R.7mers.txt	ENCFF282GMF	file_enrichment	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9265
chris-burge:PCBP2_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF877XOK	file_library-fraction	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9266
chris-burge:PCBP2_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF986WIW	file_library-fraction	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9267
chris-burge:PCBP2_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF203BAO	file_library-fraction	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9268
chris-burge:PCBP2_est_binding_frac.7mers.ordered_by_enrichment.txt	ENCFF884AGK	file_library-fraction	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9269
chris-burge:HepG2.with_motif.PCBP2.bed.gz	ENCFF999HRP	file_bed	RNA Bind-n-Seq	PCBP2		Yes	Released	2022-07-14	ENCODE3			9735

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PCBP2.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PCBP2_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
PCBP2_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
PCBP2_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
PCBP2_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
PCBP2_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP2_input.fastq.gz	ENCODE3
PCBP2_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PCBP2_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
PCBP2_est_binding_frac.7mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP2_1300.fastq.gz,PCBP2_20.fastq.gz,PCBP2_320.fastq.gz,PCBP2_5.fastq.gz,PCBP2_80.fastq.gz,PCBP2_input.fastq.gz		ENCODE3
HepG2.with_motif.PCBP2.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PCBP2_enrichment_R.5mers.txt,345.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3