Experiment Information (Status: Released)

RBP	PCBP1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	99

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
PCBP1-1300	RBNS	20-20	1300	PCBP1_1300.fastq.gz
PCBP1-20	RBNS	20-20	20	PCBP1_20.fastq.gz
PCBP1-320	RBNS	20-20	320	PCBP1_320.fastq.gz
PCBP1-5	RBNS	20-20	5	PCBP1_5.fastq.gz
PCBP1-80	RBNS	20-20	80	PCBP1_80.fastq.gz
PCBP1-input	CN	20-20	0	PCBP1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:PCBP1	ENCSR539RTM	experiment	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8064
chris-burge:PCBP1_SECP43-input-cntl	ENCSR837OWO	experiment	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8065
chris-burge:lib-PCBP1-1	ENCLB735HPD	library	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8370
chris-burge:lib-PCBP1-2	ENCLB425QRW	library	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8371
chris-burge:lib-PCBP1-3	ENCLB295XVJ	library	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8372
chris-burge:lib-PCBP1-4	ENCLB945JTR	library	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8373
chris-burge:lib-PCBP1-5	ENCLB780NJF	library	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8374
chris-burge:lib-PCBP1-input-cntl	ENCLB195QDM	library	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-12	ENCODE3			8375
chris-burge:PCBP1_1300.fastq.gz	ENCFF111WYI	file_fastq	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			8789
chris-burge:PCBP1_20.fastq.gz	ENCFF015VYZ	file_fastq	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			8790
chris-burge:PCBP1_320.fastq.gz	ENCFF975PLP	file_fastq	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			8791
chris-burge:PCBP1_5.fastq.gz	ENCFF134JFO	file_fastq	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			8792
chris-burge:PCBP1_80.fastq.gz	ENCFF965AGF	file_fastq	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			8793
chris-burge:PCBP1_input.fastq.gz	ENCFF395ETZ	file_fastq	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			8794
chris-burge:PCBP1_enrichment_R.4mers.txt	ENCFF894ONZ	file_enrichment	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9254
chris-burge:PCBP1_enrichment_R.5mers.txt	ENCFF268RKR	file_enrichment	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9255
chris-burge:PCBP1_enrichment_R.6mers.txt	ENCFF564LBJ	file_enrichment	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9256
chris-burge:PCBP1_enrichment_R.7mers.txt	ENCFF669GAJ	file_enrichment	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9257
chris-burge:PCBP1_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF488GYB	file_library-fraction	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9258
chris-burge:PCBP1_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF153TFF	file_library-fraction	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9259
chris-burge:PCBP1_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF730IXM	file_library-fraction	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9260
chris-burge:PCBP1_est_binding_frac.7mers.ordered_by_enrichment.txt	ENCFF391AFQ	file_library-fraction	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9261
chris-burge:HepG2.with_motif.PCBP1.bed.gz	ENCFF544DRZ	file_bed	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9733
chris-burge:K562.with_motif.PCBP1.bed.gz	ENCFF319TDW	file_bed	RNA Bind-n-Seq	PCBP1		Yes	Released	2022-07-14	ENCODE3			9734

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
PCBP1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
PCBP1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
PCBP1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
PCBP1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
PCBP1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
PCBP1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		PCBP1_input.fastq.gz	ENCODE3
PCBP1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
PCBP1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
PCBP1_est_binding_frac.7mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	PCBP1_1300.fastq.gz,PCBP1_20.fastq.gz,PCBP1_320.fastq.gz,PCBP1_5.fastq.gz,PCBP1_80.fastq.gz,PCBP1_input.fastq.gz		ENCODE3
HepG2.with_motif.PCBP1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PCBP1_enrichment_R.5mers.txt,692.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.PCBP1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	PCBP1_enrichment_R.5mers.txt,719.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3