Experiment Information (Status: Released)

RBP	NUPL2
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	70

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
NUPL2-1300	RBNS	20-20	1300	NUPL2_1300.fastq.gz
NUPL2-20	RBNS	20-20	20	NUPL2_20.fastq.gz
NUPL2-320	RBNS	20-20	320	NUPL2_320.fastq.gz
NUPL2-5	RBNS	20-20	5	NUPL2_5.fastq.gz
NUPL2-80	RBNS	20-20	80	NUPL2_80.fastq.gz
NUPL2-input	CN	20-20	0	NUPL2_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:NUPL2	ENCSR102MQN	experiment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8061
chris-burge:NUPL2_PRR3-input-cntl	ENCSR278BSO	experiment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8062
chris-burge:lib-NUPL2_PRR3-input-cntl	ENCLB655GXZ	library	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8359
chris-burge:lib-NUPL2-1	ENCLB421ZXR	library	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8360
chris-burge:lib-NUPL2-2	ENCLB176QAO	library	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8361
chris-burge:lib-NUPL2-3	ENCLB621YRC	library	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8362
chris-burge:lib-NUPL2-4	ENCLB064HLF	library	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8363
chris-burge:lib-NUPL2-5	ENCLB307SEL	library	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-12	ENCODE3			8364
chris-burge:NUPL2_1300.fastq.gz	ENCFF143HKO	file_fastq	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			8778
chris-burge:NUPL2_20.fastq.gz	ENCFF558MQD	file_fastq	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			8779
chris-burge:NUPL2_320.fastq.gz	ENCFF967YLZ	file_fastq	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			8780
chris-burge:NUPL2_5.fastq.gz	ENCFF452SPV	file_fastq	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			8781
chris-burge:NUPL2_80.fastq.gz	ENCFF174KHL	file_fastq	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			8782
chris-burge:NUPL2_input.fastq.gz	ENCFF137VIC	file_fastq	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			8783
chris-burge:NUPL2_enrichment_R.4mers.txt	ENCFF787TMW	file_enrichment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9236
chris-burge:NUPL2_enrichment_R.5mers.txt	ENCFF718QMF	file_enrichment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9237
chris-burge:NUPL2_enrichment_R.6mers.txt	ENCFF617KGP	file_enrichment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9238
chris-burge:NUPL2_enrichment_R.7mers.txt	ENCFF497QML	file_enrichment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9239
chris-burge:NUPL2_est_binding_frac.4mers.txt	ENCFF679OPD	file_library-fraction	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9240
chris-burge:NUPL2_est_binding_frac.5mers.txt	ENCFF413EHO	file_library-fraction	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9241
chris-burge:NUPL2_est_binding_frac.6mers.txt	ENCFF303FLJ	file_library-fraction	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9242
chris-burge:NUPL2_est_binding_frac.7mers.txt	ENCFF798MYY	file_library-fraction	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9243
chris-burge:NUPL2.logo_1.PWM.txt	ENCFF539CUI	file_enrichment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9244
chris-burge:NUPL2.logo_2.PWM.txt	ENCFF157IWY	file_enrichment	RNA Bind-n-Seq	NUPL2		Yes	Released	2022-07-14	ENCODE3			9245

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
NUPL2.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
NUPL2_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
NUPL2_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
NUPL2_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
NUPL2_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
NUPL2_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		NUPL2_input.fastq.gz	ENCODE3
NUPL2_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
NUPL2_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3
NUPL2_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	NUPL2_1300.fastq.gz,NUPL2_20.fastq.gz,NUPL2_320.fastq.gz,NUPL2_5.fastq.gz,NUPL2_80.fastq.gz,NUPL2_input.fastq.gz		ENCODE3