Experiment Information (Status: Released)

RBP	LIN28B
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	17

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
LIN28B-1300	RBNS	20-20	1300	LIN28B_1300.fastq.gz
LIN28B-5	RBNS	20-20	5	LIN28B_5.fastq.gz
LIN28B-80	RBNS	20-20	80	LIN28B_80.fastq.gz
LIN28B-input	CN	20-20	0	LIN28B_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:LIN28B-input-cntl	ENCSR094HGB	experiment	RNA Bind-n-Seq	LIN28B	NT-BGHcLV14-2	Yes	Released	2020-11-23	ENCODE4			1903
chris-burge:LIN28B	ENCSR369RLA	experiment	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			1904
chris-burge:lib-LIN28B-1	ENCLB260DXN	library	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			1929
chris-burge:lib-LIN28B-2	ENCLB102KZM	library	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-68	Yes	Released	2020-11-23	ENCODE4			1930
chris-burge:lib-LIN28B-3	ENCLB676JTM	library	RNA Bind-n-Seq	LIN28B	NT-BGHcLV14-1	Yes	Released	2020-11-23	ENCODE4			1931
chris-burge:lib-LIN28B-input-cntl	ENCLB769TOF	library	RNA Bind-n-Seq	LIN28B	NT-BGHcLV14-2	Yes	Released	2020-11-23	ENCODE4			1932
chris-burge:LIN28B_1300.fastq.gz	ENCFF009HWR	file_fastq	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			1969
chris-burge:LIN28B_5.fastq.gz	ENCFF409TMI	file_fastq	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-68	Yes	Released	2020-11-23	ENCODE4			1970
chris-burge:LIN28B_80.fastq.gz	ENCFF708BUH	file_fastq	RNA Bind-n-Seq	LIN28B	NT-BGHcLV14-1	Yes	Released	2020-11-23	ENCODE4			1971
chris-burge:LIN28B_input.fastq.gz	ENCFF882HWV	file_fastq	RNA Bind-n-Seq	LIN28B	NT-BGHcLV14-2	Yes	Released	2020-11-23	ENCODE4			1972
chris-burge:LIN28B_5mer_logo0.PWM	ENCFF572WPM	file_pwm	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2011
chris-burge:LIN28B_5mer_logo1.PWM	ENCFF105LNF	file_pwm	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2012
chris-burge:LIN28B_6mer_logo0.PWM	ENCFF410FBU	file_pwm	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2013
chris-burge:LIN28B_6mer_logo1.PWM	ENCFF003NMX	file_pwm	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2014
chris-burge:LIN28B_enrichment_R.4mers.mark_adapters.txt	ENCFF784JYD	file_enrichment	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2050
chris-burge:LIN28B_enrichment_R.5mers.mark_adapters.txt	ENCFF189NSX	file_enrichment	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2051
chris-burge:LIN28B_enrichment_R.6mers.mark_adapters.txt	ENCFF799ZVX	file_enrichment	RNA Bind-n-Seq	LIN28B	RPS6-BGKcLV13-67	Yes	Released	2020-11-23	ENCODE4			2052

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
LIN28B_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		LIN28B_input.fastq.gz	ENCODE4
LIN28B_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		LIN28B_input.fastq.gz	ENCODE4
LIN28B_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		LIN28B_input.fastq.gz	ENCODE4
LIN28B_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
LIN28B_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_5mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	LIN28B_1300.fastq.gz,LIN28B_5.fastq.gz,LIN28B_80.fastq.gz,LIN28B_input.fastq.gz		ENCODE4
LIN28B_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
LIN28B_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
LIN28B_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4