Experiment Information (Status: Released)

RBP	KHDRBS2
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	29

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
KHDRBS2-1300	RBNS	20-20	1300	KHDRBS2_1300.fastq.gz
KHDRBS2-20	RBNS	20-20	20	KHDRBS2_20.fastq.gz
KHDRBS2-320	RBNS	20-20	320	KHDRBS2_320.fastq.gz
KHDRBS2-5	RBNS	20-20	5	KHDRBS2_5.fastq.gz
KHDRBS2-80	RBNS	20-20	80	KHDRBS2_80.fastq.gz
KHDRBS2-input	CN	20-20	0	KHDRBS2_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:KHDRBS2	ENCSR575QYE	experiment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8047
chris-burge:KHDRBS2-input-cntl	ENCSR564OYI	experiment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8048
chris-burge:lib-KHDRBS2-1	ENCLB355KUM	library	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8316
chris-burge:lib-KHDRBS2-2	ENCLB111ARU	library	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8317
chris-burge:lib-KHDRBS2-3	ENCLB582JLT	library	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8318
chris-burge:lib-KHDRBS2-4	ENCLB199FNF	library	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8319
chris-burge:lib-KHDRBS2-5	ENCLB821UID	library	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8320
chris-burge:lib-KHDRBS2-input-cntl	ENCLB872AXV	library	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-12	ENCODE3			8321
chris-burge:KHDRBS2_1300.fastq.gz	ENCFF903TJA	file_fastq	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			8746
chris-burge:KHDRBS2_20.fastq.gz	ENCFF725OYS	file_fastq	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			8747
chris-burge:KHDRBS2_320.fastq.gz	ENCFF234WAZ	file_fastq	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			8748
chris-burge:KHDRBS2_5.fastq.gz	ENCFF803LHT	file_fastq	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			8749
chris-burge:KHDRBS2_80.fastq.gz	ENCFF276YSZ	file_fastq	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			8750
chris-burge:KHDRBS2_input.fastq.gz	ENCFF449THM	file_fastq	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			8751
chris-burge:KHDRBS2_enrichment_R.4mers.txt	ENCFF456XDP	file_enrichment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9195
chris-burge:KHDRBS2_enrichment_R.5mers.txt	ENCFF388TRM	file_enrichment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9196
chris-burge:KHDRBS2_enrichment_R.6mers.txt	ENCFF083OIG	file_enrichment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9197
chris-burge:KHDRBS2_enrichment_R.7mers.txt	ENCFF465ZHS	file_enrichment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9198
chris-burge:KHDRBS2_est_binding_frac.4mers.txt	ENCFF859PTL	file_library-fraction	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9199
chris-burge:KHDRBS2_est_binding_frac.5mers.txt	ENCFF192FTT	file_library-fraction	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9200
chris-burge:KHDRBS2_est_binding_frac.6mers.txt	ENCFF026GXV	file_library-fraction	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9201
chris-burge:KHDRBS2_est_binding_frac.7mers.txt	ENCFF193NAZ	file_library-fraction	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9202
chris-burge:KHDRBS2.logo_1.PWM.txt	ENCFF193FIH	file_enrichment	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9203
chris-burge:K562.with_motif.KHDRBS1.bed.gz	ENCFF715SQI	file_bed	RNA Bind-n-Seq	KHDRBS2		Yes	Released	2022-07-14	ENCODE3			9729

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
KHDRBS2.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
KHDRBS2_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS2_input.fastq.gz	ENCODE3
KHDRBS2_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS2_input.fastq.gz	ENCODE3
KHDRBS2_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS2_input.fastq.gz	ENCODE3
KHDRBS2_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS2_input.fastq.gz	ENCODE3
KHDRBS2_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS2_input.fastq.gz	ENCODE3
KHDRBS2_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
KHDRBS2_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
KHDRBS2_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS2_1300.fastq.gz,KHDRBS2_20.fastq.gz,KHDRBS2_320.fastq.gz,KHDRBS2_5.fastq.gz,KHDRBS2_80.fastq.gz,KHDRBS2_input.fastq.gz		ENCODE3
K562.with_motif.KHDRBS1.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	KHDRBS2_enrichment_R.5mers.txt,353.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3