Experiment Information (Status: Released)

RBP	HNRNPK
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	87

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
HNRNPK-1300	RBNS	20-20	1300	HNRNPK_1300.fastq.gz
HNRNPK-20	RBNS	20-20	20	HNRNPK_20.fastq.gz
HNRNPK-320	RBNS	20-20	320	HNRNPK_320.fastq.gz
HNRNPK-5	RBNS	20-20	5	HNRNPK_5.fastq.gz
HNRNPK-80	RBNS	20-20	80	HNRNPK_80.fastq.gz
HNRNPK-input	CN	20-20	0	HNRNPK_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:HNRNPK	ENCSR368NMO	experiment	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8037
chris-burge:HNRNPK-input-cntl	ENCSR944GMN	experiment	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8038
chris-burge:lib-HNRNPK-1	ENCLB391HQR	library	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8285
chris-burge:lib-HNRNPK-2	ENCLB133EVE	library	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8286
chris-burge:lib-HNRNPK-3	ENCLB624BWH	library	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8287
chris-burge:lib-HNRNPK-4	ENCLB245NWT	library	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8288
chris-burge:lib-HNRNPK-5	ENCLB448TEV	library	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8289
chris-burge:lib-HNRNPK-input-cntl	ENCLB605JDC	library	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-12	ENCODE3			8290
chris-burge:HNRNPK_1300.fastq.gz	ENCFF674RCB	file_fastq	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			8723
chris-burge:HNRNPK_20.fastq.gz	ENCFF732XFP	file_fastq	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			8724
chris-burge:HNRNPK_320.fastq.gz	ENCFF004OKN	file_fastq	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			8725
chris-burge:HNRNPK_5.fastq.gz	ENCFF261ZHZ	file_fastq	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			8726
chris-burge:HNRNPK_80.fastq.gz	ENCFF281CNE	file_fastq	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			8727
chris-burge:HNRNPK_input.fastq.gz	ENCFF537ORU	file_fastq	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			8728
chris-burge:HNRNPK_enrichment_R.4mers.txt	ENCFF574ANJ	file_enrichment	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9161
chris-burge:HNRNPK_enrichment_R.5mers.txt	ENCFF715DIL	file_enrichment	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9162
chris-burge:HNRNPK_enrichment_R.6mers.txt	ENCFF346XPF	file_enrichment	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9163
chris-burge:HNRNPK_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF595IBV	file_library-fraction	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9164
chris-burge:HNRNPK_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF850EVL	file_library-fraction	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9165
chris-burge:HNRNPK_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF775OKJ	file_library-fraction	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9166
chris-burge:HepG2.with_motif.HNRNPK.bed.gz	ENCFF813TVN	file_bed	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9722
chris-burge:K562.with_motif.HNRNPK.bed.gz	ENCFF298QFN	file_bed	RNA Bind-n-Seq	HNRNPK		Yes	Released	2022-07-14	ENCODE3			9723

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
HNRNPK.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
HNRNPK_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		HNRNPK_input.fastq.gz	ENCODE3
HNRNPK_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		HNRNPK_input.fastq.gz	ENCODE3
HNRNPK_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		HNRNPK_input.fastq.gz	ENCODE3
HNRNPK_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		HNRNPK_input.fastq.gz	ENCODE3
HNRNPK_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		HNRNPK_input.fastq.gz	ENCODE3
HNRNPK_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
HNRNPK_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPK_1300.fastq.gz,HNRNPK_20.fastq.gz,HNRNPK_320.fastq.gz,HNRNPK_5.fastq.gz,HNRNPK_80.fastq.gz,HNRNPK_input.fastq.gz		ENCODE3
HNRNPK_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPK_1300.fastq.gz,HNRNPK_20.fastq.gz,HNRNPK_320.fastq.gz,HNRNPK_5.fastq.gz,HNRNPK_80.fastq.gz,HNRNPK_input.fastq.gz		ENCODE3
HNRNPK_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPK_1300.fastq.gz,HNRNPK_20.fastq.gz,HNRNPK_320.fastq.gz,HNRNPK_5.fastq.gz,HNRNPK_80.fastq.gz,HNRNPK_input.fastq.gz		ENCODE3
HNRNPK_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPK_1300.fastq.gz,HNRNPK_20.fastq.gz,HNRNPK_320.fastq.gz,HNRNPK_5.fastq.gz,HNRNPK_80.fastq.gz,HNRNPK_input.fastq.gz		ENCODE3
HNRNPK_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPK_1300.fastq.gz,HNRNPK_20.fastq.gz,HNRNPK_320.fastq.gz,HNRNPK_5.fastq.gz,HNRNPK_80.fastq.gz,HNRNPK_input.fastq.gz		ENCODE3
HNRNPK_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	HNRNPK_1300.fastq.gz,HNRNPK_20.fastq.gz,HNRNPK_320.fastq.gz,HNRNPK_5.fastq.gz,HNRNPK_80.fastq.gz,HNRNPK_input.fastq.gz		ENCODE3
K562.with_motif.HNRNPK.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	HNRNPK_enrichment_R.5mers.txt,326.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
HepG2.with_motif.HNRNPK.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	HNRNPK_enrichment_R.5mers.txt,206.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3