Experiment Information (Status: Released)

RBP	HNRNPF
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	63

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
HNRNPF-mockPD	CN	40-40	0	hnRNPF_0.fastq.gz
HNRNPF-1300	RBNS	40-40	1300	hnRNPF_1300.fastq.gz
HNRNPF-20	RBNS	40-40	20	hnRNPF_20.fastq.gz
HNRNPF-320	RBNS	40-40	320	hnRNPF_320.fastq.gz
HNRNPF-5	RBNS	40-40	5	hnRNPF_5.fastq.gz
HNRNPF-80	RBNS	40-40	80	hnRNPF_80.fastq.gz
HNRNPF-input	CN	40-40	0	hnRNPF_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:hnRNPF	ENCSR376SUZ	experiment	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8031
chris-burge:hnRNPF-input-cntl	ENCSR462ZJK	experiment	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8032
chris-burge:hnRNPF-mockPD-cntl	ENCSR234DYH	experiment	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8033
chris-burge:lib-hnRNPF-1	ENCLB116XPG	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8271
chris-burge:lib-hnRNPF-2	ENCLB495RUK	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8272
chris-burge:lib-hnRNPF-3	ENCLB090UEM	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8273
chris-burge:lib-hnRNPF-4	ENCLB420ZCF	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8274
chris-burge:lib-hnRNPF-5	ENCLB443KSR	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8275
chris-burge:lib-hnRNPF-input-cntl	ENCLB309WRS	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8276
chris-burge:lib-hnRNPF-mockPD-cntl	ENCLB874XCJ	library	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-12	ENCODE3			8277
chris-burge:hnRNPF_80.fastq.gz	ENCFF002DGF	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9619
chris-burge:hnRNPF_1300.fastq.gz	ENCFF002DGB	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9620
chris-burge:hnRNPF_20.fastq.gz	ENCFF002DGC	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9621
chris-burge:hnRNPF_320.fastq.gz	ENCFF002DGD	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9622
chris-burge:hnRNPF_5.fastq.gz	ENCFF002DGE	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9623
chris-burge:hnRNPF_est_binding_frac.7mers.txt	ENCFF002DER	file_library-fraction	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9624
chris-burge:hnRNPF_est_binding_frac.5mers.txt	ENCFF002DEP	file_library-fraction	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9625
chris-burge:hnRNPF_est_binding_frac.6mers.txt	ENCFF002DEQ	file_library-fraction	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9626
chris-burge:hnRNPF_enrichment_R.6mers.txt	ENCFF002DEN	file_enrichment	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9627
chris-burge:hnRNPF_enrichment_R.7mers.txt	ENCFF002DEO	file_enrichment	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9628
chris-burge:hnRNPF_enrichment_R.5mers.txt	ENCFF002DEM	file_enrichment	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9629
chris-burge:hnRNPF_input.fastq.gz	ENCFF002DGG	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9630
chris-burge:hnRNPF_0.fastq.gz	ENCFF002DGA	file_fastq	RNA Bind-n-Seq	HNRNPF		Yes	Released	2022-07-14	ENCODE3			9631

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
HNRNPF.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPF_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPF_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPF_0.fastq.gz,hnRNPF_input.fastq.gz	ENCODE3
hnRNPF_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPF_0.fastq.gz,hnRNPF_input.fastq.gz	ENCODE3
hnRNPF_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPF_0.fastq.gz,hnRNPF_input.fastq.gz	ENCODE3
hnRNPF_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPF_0.fastq.gz,hnRNPF_input.fastq.gz	ENCODE3
hnRNPF_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPF_0.fastq.gz,hnRNPF_input.fastq.gz	ENCODE3
hnRNPF_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPF_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPF_0.fastq.gz,hnRNPF_1300.fastq.gz,hnRNPF_20.fastq.gz,hnRNPF_320.fastq.gz,hnRNPF_5.fastq.gz,hnRNPF_80.fastq.gz,hnRNPF_input.fastq.gz		ENCODE3
hnRNPF_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPF_0.fastq.gz,hnRNPF_1300.fastq.gz,hnRNPF_20.fastq.gz,hnRNPF_320.fastq.gz,hnRNPF_5.fastq.gz,hnRNPF_80.fastq.gz,hnRNPF_input.fastq.gz		ENCODE3
hnRNPF_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPF_0.fastq.gz,hnRNPF_1300.fastq.gz,hnRNPF_20.fastq.gz,hnRNPF_320.fastq.gz,hnRNPF_5.fastq.gz,hnRNPF_80.fastq.gz,hnRNPF_input.fastq.gz		ENCODE3
hnRNPF_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPF_0.fastq.gz,hnRNPF_1300.fastq.gz,hnRNPF_20.fastq.gz,hnRNPF_320.fastq.gz,hnRNPF_5.fastq.gz,hnRNPF_80.fastq.gz,hnRNPF_input.fastq.gz		ENCODE3
hnRNPF_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPF_0.fastq.gz,hnRNPF_1300.fastq.gz,hnRNPF_20.fastq.gz,hnRNPF_320.fastq.gz,hnRNPF_5.fastq.gz,hnRNPF_80.fastq.gz,hnRNPF_input.fastq.gz		ENCODE3
hnRNPF_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPF_0.fastq.gz,hnRNPF_1300.fastq.gz,hnRNPF_20.fastq.gz,hnRNPF_320.fastq.gz,hnRNPF_5.fastq.gz,hnRNPF_80.fastq.gz,hnRNPF_input.fastq.gz		ENCODE3