Experiment Information (Status: Released)

RBP	HNRNPD
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	58

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
HNRNPD-mockPD	CN	40-40	0	hnRNPD0_0.fastq.gz
HNRNPD-1300	RBNS	40-40	1300	hnRNPD0_1300.fastq.gz
HNRNPD-20	RBNS	40-40	20	hnRNPD0_20.fastq.gz
HNRNPD-320	RBNS	40-40	320	hnRNPD0_320.fastq.gz
HNRNPD-5	RBNS	40-40	5	hnRNPD0_5.fastq.gz
HNRNPD-80	RBNS	40-40	80	hnRNPD0_80.fastq.gz
HNRNPD-input	CN	40-40	0	hnRNPD0_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:hnRNPD	ENCSR175OMA	experiment	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8026
chris-burge:hnRNPD-input-cntl	ENCSR141NLX	experiment	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8027
chris-burge:hnRNPD-mockPD-cntl	ENCSR394HHV	experiment	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8028
chris-burge:lib-hnRNPD-1	ENCLB680IPJ	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8258
chris-burge:lib-hnRNPD-2	ENCLB182ICF	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8259
chris-burge:lib-hnRNPD-3	ENCLB178FYR	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8260
chris-burge:lib-hnRNPD-4	ENCLB602PQA	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8261
chris-burge:lib-hnRNPD-5	ENCLB721EAM	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8262
chris-burge:lib-hnRNPD-input-cntl	ENCLB239VIA	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8263
chris-burge:lib-hnRNPD-mockPD-cntl	ENCLB608BIJ	library	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-12	ENCODE3			8264
chris-burge:hnRNPD0_320.fastq.gz	ENCFF002DFW	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9606
chris-burge:hnRNPD0_5.fastq.gz	ENCFF002DFX	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9607
chris-burge:hnRNPD0_80.fastq.gz	ENCFF002DFY	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9608
chris-burge:hnRNPD0_1300.fastq.gz	ENCFF002DFU	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9609
chris-burge:hnRNPD0_20.fastq.gz	ENCFF002DFV	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9610
chris-burge:hnRNPD0_est_binding_frac.5mers.txt	ENCFF002DEJ	file_library-fraction	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9611
chris-burge:hnRNPD0_est_binding_frac.7mers.txt	ENCFF002DEL	file_library-fraction	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9612
chris-burge:hnRNPD0_est_binding_frac.6mers.txt	ENCFF002DEK	file_library-fraction	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9613
chris-burge:hnRNPD0_enrichment_R.7mers.txt	ENCFF002DEI	file_enrichment	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9614
chris-burge:hnRNPD0_enrichment_R.5mers.txt	ENCFF002DEG	file_enrichment	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9615
chris-burge:hnRNPD0_enrichment_R.6mers.txt	ENCFF002DEH	file_enrichment	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9616
chris-burge:hnRNPD0_input.fastq.gz	ENCFF002DFZ	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9617
chris-burge:hnRNPD0_0.fastq.gz	ENCFF002DFT	file_fastq	RNA Bind-n-Seq	HNRNPD		Yes	Released	2022-07-14	ENCODE3			9618

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
HNRNPD.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPD0_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPD0_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPD0_0.fastq.gz,hnRNPD0_input.fastq.gz	ENCODE3
hnRNPD0_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPD0_0.fastq.gz,hnRNPD0_input.fastq.gz	ENCODE3
hnRNPD0_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPD0_0.fastq.gz,hnRNPD0_input.fastq.gz	ENCODE3
hnRNPD0_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPD0_0.fastq.gz,hnRNPD0_input.fastq.gz	ENCODE3
hnRNPD0_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPD0_0.fastq.gz,hnRNPD0_input.fastq.gz	ENCODE3
hnRNPD0_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPD0_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPD0_0.fastq.gz,hnRNPD0_1300.fastq.gz,hnRNPD0_20.fastq.gz,hnRNPD0_320.fastq.gz,hnRNPD0_5.fastq.gz,hnRNPD0_80.fastq.gz,hnRNPD0_input.fastq.gz		ENCODE3
hnRNPD0_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPD0_0.fastq.gz,hnRNPD0_1300.fastq.gz,hnRNPD0_20.fastq.gz,hnRNPD0_320.fastq.gz,hnRNPD0_5.fastq.gz,hnRNPD0_80.fastq.gz,hnRNPD0_input.fastq.gz		ENCODE3
hnRNPD0_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPD0_0.fastq.gz,hnRNPD0_1300.fastq.gz,hnRNPD0_20.fastq.gz,hnRNPD0_320.fastq.gz,hnRNPD0_5.fastq.gz,hnRNPD0_80.fastq.gz,hnRNPD0_input.fastq.gz		ENCODE3
hnRNPD0_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPD0_0.fastq.gz,hnRNPD0_1300.fastq.gz,hnRNPD0_20.fastq.gz,hnRNPD0_320.fastq.gz,hnRNPD0_5.fastq.gz,hnRNPD0_80.fastq.gz,hnRNPD0_input.fastq.gz		ENCODE3
hnRNPD0_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPD0_0.fastq.gz,hnRNPD0_1300.fastq.gz,hnRNPD0_20.fastq.gz,hnRNPD0_320.fastq.gz,hnRNPD0_5.fastq.gz,hnRNPD0_80.fastq.gz,hnRNPD0_input.fastq.gz		ENCODE3
hnRNPD0_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPD0_0.fastq.gz,hnRNPD0_1300.fastq.gz,hnRNPD0_20.fastq.gz,hnRNPD0_320.fastq.gz,hnRNPD0_5.fastq.gz,hnRNPD0_80.fastq.gz,hnRNPD0_input.fastq.gz		ENCODE3