Experiment Information (Status: Released)

RBP	HNRNPC
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	64

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
HNRNPC-mockPD	CN	20-20	0	hnRNPC_0.fastq.gz
HNRNPC-1300	RBNS	20-20	1300	hnRNPC_1300.fastq.gz
HNRNPC-20	RBNS	20-20	20	hnRNPC_20.fastq.gz
HNRNPC-320	RBNS	20-20	320	hnRNPC_320.fastq.gz
HNRNPC-5	RBNS	20-20	5	hnRNPC_5.fastq.gz
HNRNPC-80	RBNS	20-20	80	hnRNPC_80.fastq.gz
HNRNPC-input	CN	20-20	0	hnRNPC_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:hnRNPC	ENCSR569UIU	experiment	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8022
chris-burge:hnRNPC-input-cntl	ENCSR831ZFS	experiment	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8023
chris-burge:hnRNPC-mockPD-cntl	ENCSR142ZEQ	experiment	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8024
chris-burge:lib-hnRNPC-1	ENCLB217PBJ	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8246
chris-burge:lib-hnRNPC-2	ENCLB926XQJ	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8247
chris-burge:lib-hnRNPC-3	ENCLB952CGM	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8248
chris-burge:lib-hnRNPC-4	ENCLB876EKQ	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8249
chris-burge:lib-hnRNPC-5	ENCLB784BIY	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8250
chris-burge:lib-hnRNPC-input-cntl	ENCLB805BTI	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8251
chris-burge:lib-hnRNPC-mockPD-cntl	ENCLB010XRU	library	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-12	ENCODE3			8252
chris-burge:hnRNPC_enrichment_R.4mers.txt	ENCFF266NJN	file_enrichment	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9132
chris-burge:hnRNPC_enrichment_R.5mers.txt	ENCFF592FMJ	file_enrichment	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9133
chris-burge:hnRNPC_enrichment_R.6mers.txt	ENCFF380JJG	file_enrichment	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9134
chris-burge:hnRNPC_est_binding_frac.4mers.txt	ENCFF437UNW	file_library-fraction	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9135
chris-burge:hnRNPC_est_binding_frac.5mers.txt	ENCFF660VBL	file_library-fraction	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9136
chris-burge:hnRNPC_est_binding_frac.6mers.txt	ENCFF762UHX	file_library-fraction	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9137
chris-burge:hnRNPC_0.fastq.gz	ENCFF866DQR	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9599
chris-burge:hnRNPC_1300.fastq.gz	ENCFF161YRQ	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9600
chris-burge:hnRNPC_20.fastq.gz	ENCFF366SWO	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9601
chris-burge:hnRNPC_320.fastq.gz	ENCFF235WCJ	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9602
chris-burge:hnRNPC_5.fastq.gz	ENCFF083JEO	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9603
chris-burge:hnRNPC_80.fastq.gz	ENCFF304NRR	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9604
chris-burge:hnRNPC_input.fastq.gz	ENCFF658BYB	file_fastq	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9605
chris-burge:HepG2.with_motif.HNRNPC.bed.gz	ENCFF910BCQ	file_bed	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9720
chris-burge:K562.with_motif.HNRNPC.bed.gz	ENCFF370OUE	file_bed	RNA Bind-n-Seq	HNRNPC		Yes	Released	2022-07-14	ENCODE3			9721

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
HNRNPC.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPC_0.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPC_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPC_0.fastq.gz,hnRNPC_input.fastq.gz	ENCODE3
hnRNPC_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPC_0.fastq.gz,hnRNPC_input.fastq.gz	ENCODE3
hnRNPC_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPC_0.fastq.gz,hnRNPC_input.fastq.gz	ENCODE3
hnRNPC_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPC_0.fastq.gz,hnRNPC_input.fastq.gz	ENCODE3
hnRNPC_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		hnRNPC_0.fastq.gz,hnRNPC_input.fastq.gz	ENCODE3
hnRNPC_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
hnRNPC_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPC_0.fastq.gz,hnRNPC_1300.fastq.gz,hnRNPC_20.fastq.gz,hnRNPC_320.fastq.gz,hnRNPC_5.fastq.gz,hnRNPC_80.fastq.gz,hnRNPC_input.fastq.gz		ENCODE3
hnRNPC_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPC_0.fastq.gz,hnRNPC_1300.fastq.gz,hnRNPC_20.fastq.gz,hnRNPC_320.fastq.gz,hnRNPC_5.fastq.gz,hnRNPC_80.fastq.gz,hnRNPC_input.fastq.gz		ENCODE3
hnRNPC_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPC_0.fastq.gz,hnRNPC_1300.fastq.gz,hnRNPC_20.fastq.gz,hnRNPC_320.fastq.gz,hnRNPC_5.fastq.gz,hnRNPC_80.fastq.gz,hnRNPC_input.fastq.gz		ENCODE3
hnRNPC_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPC_0.fastq.gz,hnRNPC_1300.fastq.gz,hnRNPC_20.fastq.gz,hnRNPC_320.fastq.gz,hnRNPC_5.fastq.gz,hnRNPC_80.fastq.gz,hnRNPC_input.fastq.gz		ENCODE3
hnRNPC_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPC_0.fastq.gz,hnRNPC_1300.fastq.gz,hnRNPC_20.fastq.gz,hnRNPC_320.fastq.gz,hnRNPC_5.fastq.gz,hnRNPC_80.fastq.gz,hnRNPC_input.fastq.gz		ENCODE3
hnRNPC_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	hnRNPC_0.fastq.gz,hnRNPC_1300.fastq.gz,hnRNPC_20.fastq.gz,hnRNPC_320.fastq.gz,hnRNPC_5.fastq.gz,hnRNPC_80.fastq.gz,hnRNPC_input.fastq.gz		ENCODE3
HepG2.with_motif.HNRNPC.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	hnRNPC_enrichment_R.5mers.txt,203.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.HNRNPC.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	hnRNPC_enrichment_R.5mers.txt,699.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3