Experiment Information (Status: Released)

RBP	FUBP1
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	82

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
FUBP1-1300	RBNS	20-20	1300	FUBP1_1300.fastq.gz
FUBP1-20	RBNS	20-20	20	FUBP1_20.fastq.gz
FUBP1-320	RBNS	20-20	320	FUBP1_320.fastq.gz
FUBP1-5	RBNS	20-20	5	FUBP1_5.fastq.gz
FUBP1-80	RBNS	20-20	80	FUBP1_80.fastq.gz
FUBP1-input	CN	20-20	0	FUBP1_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:FUBP1	ENCSR843QMF	experiment	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8012
chris-burge:FUBP1-input-cntl	ENCSR965YGY	experiment	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8013
chris-burge:lib-FUBP1-1	ENCLB039CRI	library	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8216
chris-burge:lib-FUBP1-2	ENCLB951WCG	library	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8217
chris-burge:lib-FUBP1-3	ENCLB228WMA	library	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8218
chris-burge:lib-FUBP1-4	ENCLB922RVN	library	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8219
chris-burge:lib-FUBP1-5	ENCLB778UXS	library	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8220
chris-burge:lib-FUBP1-input-cntl	ENCLB060WMQ	library	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-12	ENCODE3			8221
chris-burge:FUBP1_1300.fastq.gz	ENCFF319TXL	file_fastq	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			8683
chris-burge:FUBP1_20.fastq.gz	ENCFF624STJ	file_fastq	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			8684
chris-burge:FUBP1_320.fastq.gz	ENCFF597MHG	file_fastq	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			8685
chris-burge:FUBP1_5.fastq.gz	ENCFF884IBI	file_fastq	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			8686
chris-burge:FUBP1_80.fastq.gz	ENCFF677VDN	file_fastq	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			8687
chris-burge:FUBP1_input.fastq.gz	ENCFF586EOO	file_fastq	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			8688
chris-burge:FUBP1_enrichment_R.4mers.txt	ENCFF078JLK	file_enrichment	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9094
chris-burge:FUBP1_enrichment_R.5mers.txt	ENCFF588INN	file_enrichment	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9095
chris-burge:FUBP1_enrichment_R.6mers.txt	ENCFF975CXE	file_enrichment	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9096
chris-burge:FUBP1_enrichment_R.7mers.txt	ENCFF259WWZ	file_enrichment	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9097
chris-burge:FUBP1_est_binding_frac.4mers.txt	ENCFF679FDX	file_library-fraction	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9098
chris-burge:FUBP1_est_binding_frac.5mers.txt	ENCFF994WHR	file_library-fraction	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9099
chris-burge:FUBP1_est_binding_frac.6mers.txt	ENCFF064EZC	file_library-fraction	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9100
chris-burge:FUBP1_est_binding_frac.7mers.txt	ENCFF438XEM	file_library-fraction	RNA Bind-n-Seq	FUBP1		Yes	Released	2022-07-14	ENCODE3			9101

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
FUBP1.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUBP1_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP1_input.fastq.gz	ENCODE3
FUBP1_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP1_input.fastq.gz	ENCODE3
FUBP1_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP1_input.fastq.gz	ENCODE3
FUBP1_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP1_input.fastq.gz	ENCODE3
FUBP1_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		FUBP1_input.fastq.gz	ENCODE3
FUBP1_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
FUBP1_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3
FUBP1_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	FUBP1_1300.fastq.gz,FUBP1_20.fastq.gz,FUBP1_320.fastq.gz,FUBP1_5.fastq.gz,FUBP1_80.fastq.gz,FUBP1_input.fastq.gz		ENCODE3