ENCORE RBNS:AKAP8L

AKAP8L RNA Bind-n-Seq

Experiment Information (Status: Released)


RBP	AKAP8L
gene_aliases
Status	Released
Status_date	2020-11-23
Project	ENCODE4
Note
ID	16

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
AKAP8L-20	RBNS	20-20	20	AKAP8L_20.fastq.gz
AKAP8L-5	RBNS	20-20	5	AKAP8L_5.fastq.gz
AKAP8L-80	RBNS	20-20	80	AKAP8L_80.fastq.gz
AKAP8L-input	CN	20-20	0	AKAP8L_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:AKAP8L_APOBEC3C-input-cntl	ENCSR588UHH	experiment	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-40	Yes	Released	2020-11-23	ENCODE4			1896
chris-burge:AKAP8L	ENCSR110GHL	experiment	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			1897
chris-burge:lib-AKAP8L-1	ENCLB395DDK	library	RNA Bind-n-Seq	AKAP8L	DNMT1-BGKcLV13-19	Yes	Released	2020-11-23	ENCODE4			1914
chris-burge:lib-AKAP8L-2	ENCLB025ZDP	library	RNA Bind-n-Seq	AKAP8L	DNMT1-BGKcLV13-20	Yes	Released	2020-11-23	ENCODE4			1915
chris-burge:lib-AKAP8L-3	ENCLB509IDC	library	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			1916
chris-burge:lib-AKAP8L_APOBEC3C-input-cntl	ENCLB766ZED	library	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-40	Yes	Released	2020-11-23	ENCODE4			1917
chris-burge:AKAP8L_20.fastq.gz	ENCFF211BFR	file_fastq	RNA Bind-n-Seq	AKAP8L	DNMT1-BGKcLV13-19	Yes	Released	2020-11-23	ENCODE4			1954
chris-burge:AKAP8L_5.fastq.gz	ENCFF034RJL	file_fastq	RNA Bind-n-Seq	AKAP8L	DNMT1-BGKcLV13-20	Yes	Released	2020-11-23	ENCODE4			1955
chris-burge:AKAP8L_80.fastq.gz	ENCFF048KBT	file_fastq	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			1956
chris-burge:AKAP8L_input.fastq.gz	ENCFF051BKB	file_fastq	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-40	Yes	Released	2020-11-23	ENCODE4			1957
chris-burge:AKAP8L_5mer_logo0.PWM	ENCFF272RPE	file_pwm	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			1998
chris-burge:AKAP8L_5mer_logo1.PWM	ENCFF037VRZ	file_pwm	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			1999
chris-burge:AKAP8L_6mer_logo0.PWM	ENCFF154BUE	file_pwm	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			2000
chris-burge:AKAP8L_6mer_logo1.PWM	ENCFF647DAZ	file_pwm	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			2001
chris-burge:AKAP8L_enrichment_R.4mers.mark_adapters.txt	ENCFF771KFR	file_enrichment	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			2044
chris-burge:AKAP8L_enrichment_R.5mers.mark_adapters.txt	ENCFF264SDW	file_enrichment	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			2045
chris-burge:AKAP8L_enrichment_R.6mers.mark_adapters.txt	ENCFF291ILD	file_enrichment	RNA Bind-n-Seq	AKAP8L	ELAVL1-BGKcLV13-39	Yes	Released	2020-11-23	ENCODE4			2046

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
AKAP8L_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		AKAP8L_input.fastq.gz	ENCODE4
AKAP8L_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		AKAP8L_input.fastq.gz	ENCODE4
AKAP8L_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		AKAP8L_input.fastq.gz	ENCODE4
AKAP8L_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE4
AKAP8L_5mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_5mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_6mer_logo0.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_6mer_logo1.PWM	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_enrichment_R.4mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_enrichment_R.5mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_enrichment_R.6mers.mark_adapters.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	AKAP8L_20.fastq.gz,AKAP8L_5.fastq.gz,AKAP8L_80.fastq.gz,AKAP8L_input.fastq.gz		ENCODE4
AKAP8L_5mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
AKAP8L_6mer_seqlogos.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE4
AKAP8L_coomassie.pdf	pdf	document	RNA Bind-n-Seq	Burge Lab			ENCODE4