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RNF14
shRNA
in Ribo-STAMP-293T
Batch: BGRSDLV03
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
Released
)
BGRSDLV03-35dox
BGRSDLV03-36dox
idx
0
0
TRCN#_or_BGC#
TRCN0000010786
TRCN0000010786
shRNA_or_gRNA_sequence
CCGGCTGTGGATGTTGACGACGATACTCGAGTATCGTCGTCAACATCCACAGTTTTT
CCGGCTGTGGATGTTGACGACGATACTCGAGTATCGTCGTCAACATCCACAGTTTTT
PAM
Name
RNF14
RNF14
Sample_ID
BGRSDLV03-35dox
BGRSDLV03-36dox
transduction_Date
9/29/23
9/29/23
days
4 days
4 days
RBP_name
RNF14
RNF14
qPCR_result
91.7
91.1
Ave_qPCR
91.4
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc
0
0
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
0
0
Rep2_TPM
0
0
Action
Ready
Ready
Library_start_date
repeat_library
Note
ID
11397
11398
Western Blot
Western Blot info was not avaliable
Experiment Status
BGRSDLV03-35dox
BGRSDLV03-36dox
Sample_ID
BGRSDLV03-35dox
BGRSDLV03-36dox
Sample Name
Sample Name
RNF14-BGRSDLV03-35dox
RNF14-BGRSDLV03-36dox
RBP
RNF14
RNF14
Cell_Line
DOX-RS293
DOX-RS293
Exp UID
Status
Released
Released
Status_date
2025-02-13
2025-02-13
Project
ENCORE2
ENCORE2
Note
ID
12628
12629
Library-Prep
Sequencing
Library-Prep Information
BGRSDLV03-35dox
BGRSDLV03-36dox
Sample #
31
32
Sample Name
RNF14-BGRSDLV03-35dox
RNF14-BGRSDLV03-36dox
Sample_Name_Alias
Index Well Position
G08
H08
Index_table
IDT_UniqueDualIndex_96
IDT_UniqueDualIndex_96
LibPrep_date
2023-10-17
2023-10-17
Lib_ID
Lib-231017
Lib-231017
Tecan_Location
Tecan
Tecan_date
Size_bp
270
269
Peak_Molarity
63.90
51.00
libSampleQC_DNA_Well
DNA_Library_set66/set1/G9.png
DNA_Library_set66/set1/H9.png
RIN
9.9
9.9
libSample_RNA_Well
RNA_Library_set66/set1/G4.png
RNA_Library_set66/set1/H4.png
SampleQC_method
TapeStation_2022
TapeStation_2022
SampleQC_date
2023-10-18
2023-10-18
Sample_ID
BGRSDLV03-35dox
BGRSDLV03-36dox
RBP
RNF14
RNF14
Batch_ID
BGRSDLV03
BGRSDLV03
WB_result
0.000
0.000
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCORE2
ENCORE2
ID
4064
4065
Sequencing Information
BGRSDLV03-35dox
BGRSDLV03-36dox
Sample_ID
BGRSDLV03-35dox
BGRSDLV03-36dox
Sample Name
RNF14-BGRSDLV03-35dox
RNF14-BGRSDLV03-36dox
Pool ID
Pool-231018
Pool-231018
LocalServer_folder
set66
set66
total_reads
14,525,139
22,482,156
total_aligned_reads
12,817,784
19,553,252
unique_aligned_reads
11,961,657
18,225,025
percent_uniqueAligned
0.82351
0.81064
correlation_replicates
0.995871
0.995871
spikein_reads
4,506
6,430
percent_spikeins
0.00031
0.00029
original_ReadLength
101
101
QC_Status
Submitted
Submitted
ID
2783
2784
Data Submission Information
DCC submission information was not avaliable
File Information
Search:
file_name
file_path
file_format
output_type
assay_type
lab
Sample ID
platform
read_length
run_type
paired_end
assembly
genome_annotation
derived_from
controlled_by
Project
Note
FILE_ID
RNF14-BGRSDLV03-35dox_Aligned.sortedByCoord.out.bam
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bam
alignments
knockdown followed by RNA-seq
Graveley Lab
2783
GRCh38
V40
RNF14-BGRSDLV03-35dox_S31_L001_R1_001.filtered.trimmed.paired.fastq.gz,RNF14-BGRSDLV03-35dox_S31_L001_R2_001.filtered.trimmed.paired.fastq.gz
ENCORE2
9016
RNF14-BGRSDLV03-35dox_quant.sf
ENCODE_DATA/set66/salmon_ENCORE2_file_links
transcript_quantification
transcript quantifications
knockdown followed by RNA-seq
Graveley Lab
2783
GRCh38
V40
RNF14-BGRSDLV03-35dox_S31_L001_R1_001.filtered.trimmed.paired.fastq.gz,RNF14-BGRSDLV03-35dox_S31_L001_R2_001.filtered.trimmed.paired.fastq.gz
ENCORE2
9216
RNF14-BGRSDLV03-35dox_S31_L001_R1_001.filtered.trimmed.paired.fastq.gz
ENCODE_DATA/set66/fastq_trimmed
fastq
reads
knockdown followed by RNA-seq
Graveley Lab
2783
NovaSeq6000
100
paired-ended
1
NT-BGRSDLV03-3dox_S3_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGRSDLV03-4dox_merged_R1_001.filtered.trimmed.paired.fastq.gz
ENCORE2
8936
RNF14-BGRSDLV03-35dox_S31_L001_R2_001.filtered.trimmed.paired.fastq.gz
ENCODE_DATA/set66/fastq_trimmed
fastq
reads
knockdown followed by RNA-seq
Graveley Lab
2783
NovaSeq6000
100
paired-ended
2
NT-BGRSDLV03-3dox_S3_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGRSDLV03-4dox_merged_R2_001.filtered.trimmed.paired.fastq.gz
ENCORE2
8976
RNF14-BGRSDLV03-35dox_Signal.Unique.strand+.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig+unique
plus strand signal of unique reads
knockdown followed by RNA-seq
Graveley Lab
2783
GRCh38
V40
RNF14-BGRSDLV03-35dox/Aligned.sortedByCoord.out.bam
ENCORE2
9056
RNF14-BGRSDLV03-35dox_Signal.Unique.strand-.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig-unique
minus strand signal of unique reads
knockdown followed by RNA-seq
Graveley Lab
2783
GRCh38
V40
RNF14-BGRSDLV03-35dox/Aligned.sortedByCoord.out.bam
ENCORE2
9096
RNF14-BGRSDLV03-35dox_Signal.UniqueMultiple.strand+.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig+all
plus strand signal of all reads
knockdown followed by RNA-seq
Graveley Lab
2783
GRCh38
V40
RNF14-BGRSDLV03-35dox/Aligned.sortedByCoord.out.bam
ENCORE2
9136
RNF14-BGRSDLV03-35dox_Signal.UniqueMultiple.strand-.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig-all
minus strand signal of all reads
knockdown followed by RNA-seq
Graveley Lab
2783
GRCh38
V40
RNF14-BGRSDLV03-35dox/Aligned.sortedByCoord.out.bam
ENCORE2
9176
RNF14-BGRSDLV03-36dox_Aligned.sortedByCoord.out.bam
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bam
alignments
knockdown followed by RNA-seq
Graveley Lab
2784
GRCh38
V40
RNF14-BGRSDLV03-36dox_merged_R1_001.filtered.trimmed.paired.fastq.gz,RNF14-BGRSDLV03-36dox_merged_R2_001.filtered.trimmed.paired.fastq.gz
ENCORE2
9017
RNF14-BGRSDLV03-36dox_merged_R1_001.filtered.trimmed.paired.fastq.gz
ENCODE_DATA/set66/fastq_trimmed
fastq
reads
knockdown followed by RNA-seq
Graveley Lab
2784
NovaSeq6000
100
paired-ended
1
NT-BGRSDLV03-3dox_S3_L001_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGRSDLV03-4dox_merged_R1_001.filtered.trimmed.paired.fastq.gz
ENCORE2
8937
RNF14-BGRSDLV03-36dox_merged_R2_001.filtered.trimmed.paired.fastq.gz
ENCODE_DATA/set66/fastq_trimmed
fastq
reads
knockdown followed by RNA-seq
Graveley Lab
2784
NovaSeq6000
100
paired-ended
2
NT-BGRSDLV03-3dox_S3_L001_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGRSDLV03-4dox_merged_R2_001.filtered.trimmed.paired.fastq.gz
ENCORE2
8977
RNF14-BGRSDLV03-36dox_quant.sf
ENCODE_DATA/set66/salmon_ENCORE2_file_links
transcript_quantification
transcript quantifications
knockdown followed by RNA-seq
Graveley Lab
2784
GRCh38
V40
RNF14-BGRSDLV03-36dox_merged_R1_001.filtered.trimmed.paired.fastq.gz,RNF14-BGRSDLV03-36dox_merged_R2_001.filtered.trimmed.paired.fastq.gz
ENCORE2
9217
RNF14-BGRSDLV03-36dox_Signal.Unique.strand+.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig+unique
plus strand signal of unique reads
knockdown followed by RNA-seq
Graveley Lab
2784
GRCh38
V40
RNF14-BGRSDLV03-36dox/Aligned.sortedByCoord.out.bam
ENCORE2
9057
RNF14-BGRSDLV03-36dox_Signal.Unique.strand-.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig-unique
minus strand signal of unique reads
knockdown followed by RNA-seq
Graveley Lab
2784
GRCh38
V40
RNF14-BGRSDLV03-36dox/Aligned.sortedByCoord.out.bam
ENCORE2
9097
RNF14-BGRSDLV03-36dox_Signal.UniqueMultiple.strand+.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig+all
plus strand signal of all reads
knockdown followed by RNA-seq
Graveley Lab
2784
GRCh38
V40
RNF14-BGRSDLV03-36dox/Aligned.sortedByCoord.out.bam
ENCORE2
9137
RNF14-BGRSDLV03-36dox_Signal.UniqueMultiple.strand-.bw
ENCODE_DATA/set66/STAR_ENCORE2_trimmed_file_links
bigWig-all
minus strand signal of all reads
knockdown followed by RNA-seq
Graveley Lab
2784
GRCh38
V40
RNF14-BGRSDLV03-36dox/Aligned.sortedByCoord.out.bam
ENCORE2
9177
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