non-target      CRISPR in K562      Batch: BGKcLV48

General Information

List KD experiments controlled by BGKcLV48-1 and BGKcLV48-2


NT-BGKcLV48-1,NT-BGKcLV48-2:No KD experiments controlled by NT-BGKcLV48-1 and NT-BGKcLV48-2 are available on the database




Experiment Information (Status: Sequenced)
BGKcLV48-1BGKcLV48-2
idx00
TRCN#_or_BGC#
shRNA_or_gRNA_sequence
PAM
Namenon-targetnon-target
Sample_IDBGKcLV48-1BGKcLV48-2
transduction_Date4/15/254/15/25
daysD6D6
RBP_namenon-targetnon-target
qPCR_result
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc02097
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID61326133




Western Blot
Western Blot info was not avaliable




Experiment Status
BGKcLV48-1BGKcLV48-2
Sample_IDBGKcLV48-1BGKcLV48-2
Sample Name
Sample NameNT-BGKcLV48-1NT-BGKcLV48-2
RBPnon-targetnon-target
Cell_LineK562K562
Exp UID
StatusSequencedSequenced
Status_date2025-10-022025-10-02
ProjectENCORE2ENCORE2
Note
ID1423814239




Library-Prep Information
BGKcLV48-1BGKcLV48-2
Sample #12
Sample NameNT-BGKcLV48-1NT-BGKcLV48-2
Sample_Name_Alias
Index Well PositionA01B01
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2025-08-182025-08-18
Lib_IDLib-250818Lib-250818
Tecan_Location
Tecan
Tecan_date
Size_bp271280
Peak_Molarity78.30111.00
libSampleQC_DNA_Well
RIN
libSample_RNA_Well
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2025-08-192025-08-19
Sample_IDBGKcLV48-1BGKcLV48-2
RBPNTNT
Batch_IDBGKcLV48BGKcLV48
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID47464747




Sequencing Information
BGKcLV48-1BGKcLV48-2
Sample_IDBGKcLV48-1BGKcLV48-2
Sample NameNT-BGKcLV48-1NT-BGKcLV48-2
Pool IDPool-250822Pool-250822
LocalServer_folder
total_reads00
total_aligned_reads00
unique_aligned_reads00
percent_uniqueAligned
correlation_replicates
spikein_reads00
percent_spikeins
original_ReadLength
QC_StatusReadyToQCReadyToQC
ID34493450




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database