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SYMPK RNA-Seq in K562



SYMPK      CRISPR in K562      Control:

General Information
RBPSYMPK
Cell_LineK562
MethodCRISPR
Exp_NameSYMPK-BGKcLV42-K562
ENCODE_series_ID
Batch_IDBGKcLV42
Pool IDPool-240715
Local_Set_Nameset73
ENCODE_KD_Exp_ID
ENCODE_CN_Exp_ID
Rep1SYMPK-BGKcLV42-91
Rep2SYMPK-BGKcLV42-92
CN1NT-BGKcLV42-1
CN2NT-BGKcLV42-2
Rep1_qPCR0.0
Rep2_qPCR0.0
Rep1_WBneed discussion
Rep2_WB
Antibody Cat#13071S
Antibody Lot#lot # 1
Antibody DCC ID
StatusSubmitted
ProjectENCORE2
ID1562




Experiment Information (Status: Sequenced)
BGKcLV42-91BGKcLV42-92
idx00
TRCN#_or_BGC#BGC#0001190BGC#0001190
shRNA_or_gRNA_sequenceACTGTGATGCCACGCTCCGAACTGTGATGCCACGCTCCGA
PAMCGGCGG
NameSYMPK_95bSYMPK_95b
Sample_IDBGKcLV42-91BGKcLV42-92
transduction_Date4/23/244/23/24
daysD6D6
RBP_nameSYMPKSYMPK
qPCR_result0.00.0
Ave_qPCR0.0
RT-qPCR_primer-FCGAAAATTTGTCATCGGCTT
RT-qPCR_primer-RTCACCACGTTCACATTCTCG
protein_conc20982580
WB_resultneed discussion
Ave_WB
WB_DONE_date5/10/24
MW141kd
IP
antibody_Cat#13071Slot # 1
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Notecheck result befor releasecheck result befor release
ID58575858




Western Blot
Western Blot info was not avaliable




Experiment Status
BGKcLV42-91BGKcLV42-92
Sample_IDBGKcLV42-91BGKcLV42-92
Sample Name
Sample NameSYMPK-BGKcLV42-91SYMPK-BGKcLV42-92
RBPSYMPKSYMPK
Cell_LineK562K562
Exp UID
StatusSequencedSequenced
Status_date2024-10-272024-10-27
ProjectENCORE2ENCORE2
Note
ID1311813119




Library-Prep Information
BGKcLV42-91BGKcLV42-92
Sample #7576
Sample NameSYMPK-BGKcLV42-91SYMPK-BGKcLV42-92
Sample_Name_Alias
Index Well PositionC10D10
Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
LibPrep_date2024-06-212024-06-21
Lib_IDLib-240621Lib-240621
Tecan_Location
Tecan
Tecan_date
Size_bp322324
Peak_Molarity100.00105.00
libSampleQC_DNA_WellDNA_Library_set73/set1/C10.pngDNA_Library_set73/set1/D10.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set73/set1/C10.pngRNA_Library_set73/set1/D10.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-07-152024-07-15
Sample_IDBGKcLV42-91BGKcLV42-92
RBPSYMPKSYMPK
Batch_IDBGKcLV42BGKcLV42
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID43444345




Sequencing Information
BGKcLV42-91BGKcLV42-92
Sample_IDBGKcLV42-91BGKcLV42-92
Sample NameSYMPK-BGKcLV42-91SYMPK-BGKcLV42-92
Pool IDPool-240715Pool-240715
LocalServer_folderset73set73
total_reads39,241,46845,250,524
total_aligned_reads36,961,68042,756,531
unique_aligned_reads34,136,18439,585,648
percent_uniqueAligned0.869900.87481
correlation_replicates0.9971120.997112
spikein_reads2482,050
percent_spikeins0.000010.00005
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID32113212




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database