Notice: Undefined offset: 1 in /website/encore_alpha/gene/index.php on line 599
CDK11B RNA-Seq in K562



CDK11B      CRISPR in K562      Control:

General Information
RBPCDK11B
Cell_LineK562
MethodCRISPR
Exp_NameCDK11B-BGKcLV42-K562
ENCODE_series_ID
Batch_IDBGKcLV42
Pool IDPool-240715
Local_Set_Nameset73
ENCODE_KD_Exp_ID
ENCODE_CN_Exp_ID
Rep1CDK11B-BGKcLV42-15
Rep2CDK11B-BGKcLV42-16
CN1NT-BGKcLV42-1
CN2NT-BGKcLV42-2
Rep1_qPCRno good prmers
Rep2_qPCR
Rep1_WB50.3
Rep2_WB52.4
Antibody Cat#5524S
Antibody Lot#lot # 3
Antibody DCC ID
StatusSubmitted
ProjectENCORE2
ID1531




Experiment Information (Status: Sequenced)
BGKcLV42-15BGKcLV42-16
idx00
TRCN#_or_BGC#BGC#0001118BGC#0001118
shRNA_or_gRNA_sequenceACGGTTCGACCGAGATTCCGACGGTTCGACCGAGATTCCG
PAMGGGGGG
NameCDK11B_50CDK11B_50
Sample_IDBGKcLV42-15BGKcLV42-16
transduction_Date4/23/244/23/24
daysD6D6
RBP_nameCDK11BCDK11B
qPCR_resultno good prmers
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc25812537
WB_result50.352.4
Ave_WB51.4
WB_DONE_date5/2/24,5/7/24
MW110kd
IP
antibody_Cat#5524Slot # 3
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID57735774




Western Blot
Western Blot info was not avaliable




Experiment Status
BGKcLV42-15BGKcLV42-16
Sample_IDBGKcLV42-15BGKcLV42-16
Sample Name
Sample NameCDK11B-BGKcLV42-15CDK11B-BGKcLV42-16
RBPCDK11BCDK11B
Cell_LineK562K562
Exp UID
StatusSequencedSequenced
Status_date2024-10-272024-10-27
ProjectENCORE2ENCORE2
Note
ID1305613057




Library-Prep Information
BGKcLV42-15BGKcLV42-16
Sample #1314
Sample NameCDK11B-BGKcLV42-15CDK11B-BGKcLV42-16
Sample_Name_Alias
Index Well PositionE02F02
Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
LibPrep_date2024-06-212024-06-21
Lib_IDLib-240621Lib-240621
Tecan_Location
Tecan
Tecan_date
Size_bp310303
Peak_Molarity95.5073.30
libSampleQC_DNA_WellDNA_Library_set73/set1/E2.pngDNA_Library_set73/set1/F2.png
RIN10.010.0
libSample_RNA_WellRNA_Library_set73/set1/E2.pngRNA_Library_set73/set1/F2.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-07-152024-07-15
Sample_IDBGKcLV42-15BGKcLV42-16
RBPCDK11BCDK11B
Batch_IDBGKcLV42BGKcLV42
WB_result50.30052.400
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID42824283




Sequencing Information
BGKcLV42-15BGKcLV42-16
Sample_IDBGKcLV42-15BGKcLV42-16
Sample NameCDK11B-BGKcLV42-15CDK11B-BGKcLV42-16
Pool IDPool-240715Pool-240715
LocalServer_folderset73set73
total_reads42,343,97136,775,135
total_aligned_reads38,049,60132,859,759
unique_aligned_reads35,231,56730,381,658
percent_uniqueAligned0.832030.82615
correlation_replicates0.9987390.998739
spikein_reads2,9324,430
percent_spikeins0.000070.00012
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID31493150




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database