SF3B3-BGKcLV33-53_S93_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set53/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2067 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV33-1_S55_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV33-2_S56_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 6645 |
SF3B3-BGKcLV33-53_S93_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set53/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2067 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV33-1_S55_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV33-2_S56_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 6701 |
SF3B3-BGKcLV33-53_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 2067 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-53_S93_L002_R1_001.filtered.trimmed.paired.fastq.gz,SF3B3-BGKcLV33-53_S93_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 18122 |
SF3B3-BGKcLV33-53_Signal.Unique.strand+.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2067 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18178 |
SF3B3-BGKcLV33-53_Signal.Unique.strand-.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2067 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18234 |
SF3B3-BGKcLV33-53_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2067 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18290 |
SF3B3-BGKcLV33-53_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2067 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18346 |
SF3B3-BGKcLV33-53_quant.sf | ENCODE_DATA/set53/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 2067 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-53_S93_L002_R1_001.filtered.trimmed.paired.fastq.gz,SF3B3-BGKcLV33-53_S93_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 18402 |
SF3B3-BGKcLV33-54_S94_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set53/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2068 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV33-1_S55_L002_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV33-2_S56_L002_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 6646 |
SF3B3-BGKcLV33-54_S94_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set53/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 2068 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV33-1_S55_L002_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV33-2_S56_L002_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 6702 |
SF3B3-BGKcLV33-54_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 2068 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-54_S94_L002_R1_001.filtered.trimmed.paired.fastq.gz,SF3B3-BGKcLV33-54_S94_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 18123 |
SF3B3-BGKcLV33-54_Signal.Unique.strand+.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2068 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18179 |
SF3B3-BGKcLV33-54_Signal.Unique.strand-.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 2068 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18235 |
SF3B3-BGKcLV33-54_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2068 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18291 |
SF3B3-BGKcLV33-54_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set53/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 2068 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 18347 |
SF3B3-BGKcLV33-54_quant.sf | ENCODE_DATA/set53/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 2068 | | | | | GRCh38 | V40 | SF3B3-BGKcLV33-54_S94_L002_R1_001.filtered.trimmed.paired.fastq.gz,SF3B3-BGKcLV33-54_S94_L002_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 18403 |