ATP5A1-BGKcLV26-37_S33_L003_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set48_K/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1763 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV26-1_S7_L003_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV26-2_S8_L003_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 3856 |
ATP5A1-BGKcLV26-37_S33_L003_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set48_K/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1763 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV26-1_S7_L003_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV26-2_S8_L003_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 3906 |
ATP5A1-BGKcLV26-37_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 1763 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-37_S33_L003_R1_001.filtered.trimmed.paired.fastq.gz,ATP5A1-BGKcLV26-37_S33_L003_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 25543 |
ATP5A1-BGKcLV26-37_quant.sf | ENCODE_DATA/set48_K/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 1763 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-37_S33_L003_R1_001.filtered.trimmed.paired.fastq.gz,ATP5A1-BGKcLV26-37_S33_L003_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 25593 |
ATP5A1-BGKcLV26-37_Signal.Unique.strand+.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1763 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-37/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26559 |
ATP5A1-BGKcLV26-37_Signal.Unique.strand-.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1763 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-37/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26609 |
ATP5A1-BGKcLV26-37_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1763 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-37/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26659 |
ATP5A1-BGKcLV26-37_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1763 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-37/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26709 |
ATP5A1-BGKcLV26-38_S34_L003_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set48_K/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1764 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV26-1_S7_L003_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV26-2_S8_L003_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 3857 |
ATP5A1-BGKcLV26-38_S34_L003_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set48_K/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1764 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV26-1_S7_L003_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV26-2_S8_L003_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 3907 |
ATP5A1-BGKcLV26-38_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 1764 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-38_S34_L003_R1_001.filtered.trimmed.paired.fastq.gz,ATP5A1-BGKcLV26-38_S34_L003_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 25544 |
ATP5A1-BGKcLV26-38_quant.sf | ENCODE_DATA/set48_K/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 1764 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-38_S34_L003_R1_001.filtered.trimmed.paired.fastq.gz,ATP5A1-BGKcLV26-38_S34_L003_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 25594 |
ATP5A1-BGKcLV26-38_Signal.Unique.strand+.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1764 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-38/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26560 |
ATP5A1-BGKcLV26-38_Signal.Unique.strand-.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1764 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-38/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26610 |
ATP5A1-BGKcLV26-38_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1764 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-38/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26660 |
ATP5A1-BGKcLV26-38_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set48_K/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1764 | | | | | GRCh38 | V40 | ATP5A1-BGKcLV26-38/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 26710 |