EIF2AK2-BGKcLV13-53_TTGCCTAG+ACCACTTA_HK3H2DSXX_S63_L004_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set42/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 17 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV13-1_ATATCTCG+ATCTTAGT_HK3H2DSXX_S49_L004_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV13-2_GCGCTCTA+GCTCCGAC_HK3H2DSXX_S50_L004_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 349 |
EIF2AK2-BGKcLV13-53_TTGCCTAG+ACCACTTA_HK3H2DSXX_S63_L004_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set42/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 17 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV13-1_ATATCTCG+ATCTTAGT_HK3H2DSXX_S49_L004_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV13-2_GCGCTCTA+GCTCCGAC_HK3H2DSXX_S50_L004_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 431 |
EIF2AK2-BGKcLV13-53_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 17 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-53_TTGCCTAG+ACCACTTA_HK3H2DSXX_S63_L004_R1_001.filtered.trimmed.paired.fastq.gz,EIF2AK2-BGKcLV13-53_TTGCCTAG+ACCACTTA_HK3H2DSXX_S63_L004_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 23688 |
EIF2AK2-BGKcLV13-53_Signal.Unique.strand+.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 17 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 23770 |
EIF2AK2-BGKcLV13-53_Signal.Unique.strand-.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 17 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 23852 |
EIF2AK2-BGKcLV13-53_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 17 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 23934 |
EIF2AK2-BGKcLV13-53_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 17 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-53/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 24016 |
EIF2AK2-BGKcLV13-53_quant.sf | ENCODE_DATA/set42/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 17 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-53_TTGCCTAG+ACCACTTA_HK3H2DSXX_S63_L004_R1_001.filtered.trimmed.paired.fastq.gz,EIF2AK2-BGKcLV13-53_TTGCCTAG+ACCACTTA_HK3H2DSXX_S63_L004_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 24098 |
EIF2AK2-BGKcLV13-54_CCATTCGA+GTTGTCCG_HK3H2DSXX_S64_L004_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set42/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 18 | NovaSeq6000 | 100 | paired-ended | 1 | | | | NT-BGKcLV13-1_ATATCTCG+ATCTTAGT_HK3H2DSXX_S49_L004_R1_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV13-2_GCGCTCTA+GCTCCGAC_HK3H2DSXX_S50_L004_R1_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 350 |
EIF2AK2-BGKcLV13-54_CCATTCGA+GTTGTCCG_HK3H2DSXX_S64_L004_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE_DATA/set42/fastq_trimmed | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 18 | NovaSeq6000 | 100 | paired-ended | 2 | | | | NT-BGKcLV13-1_ATATCTCG+ATCTTAGT_HK3H2DSXX_S49_L004_R2_001.filtered.trimmed.paired.fastq.gz,NT-BGKcLV13-2_GCGCTCTA+GCTCCGAC_HK3H2DSXX_S50_L004_R2_001.filtered.trimmed.paired.fastq.gz | ENCODE4 | | 432 |
EIF2AK2-BGKcLV13-54_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 18 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-54_CCATTCGA+GTTGTCCG_HK3H2DSXX_S64_L004_R1_001.filtered.trimmed.paired.fastq.gz,EIF2AK2-BGKcLV13-54_CCATTCGA+GTTGTCCG_HK3H2DSXX_S64_L004_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 23689 |
EIF2AK2-BGKcLV13-54_Signal.Unique.strand+.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 18 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 23771 |
EIF2AK2-BGKcLV13-54_Signal.Unique.strand-.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 18 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 23853 |
EIF2AK2-BGKcLV13-54_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 18 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 23935 |
EIF2AK2-BGKcLV13-54_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set42/STAR_ENCORE2_trimmed_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 18 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-54/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 24017 |
EIF2AK2-BGKcLV13-54_quant.sf | ENCODE_DATA/set42/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 18 | | | | | GRCh38 | V40 | EIF2AK2-BGKcLV13-54_CCATTCGA+GTTGTCCG_HK3H2DSXX_S64_L004_R1_001.filtered.trimmed.paired.fastq.gz,EIF2AK2-BGKcLV13-54_CCATTCGA+GTTGTCCG_HK3H2DSXX_S64_L004_R2_001.filtered.trimmed.paired.fastq.gz | | ENCORE2 | | 24099 |