RPS3 RNA-Seq in K562

General Information


RBP	RPS3
Cell_Line	K562
Method	CRISPR
Exp_Name	RPS3-BGKcLV04-K562
ENCODE_series_ID	ENCSR916GJJ
Batch_ID	BGKcLV04
Pool ID	Pool-181119
Local_Set_Name	set41_spikeins
ENCODE_KD_Exp_ID	ENCSR865UKM
ENCODE_CN_Exp_ID	ENCSR005JBU
Rep1	RPS3-BGKcLV04-25C
Rep2	RPS3-BGKcLV04-26C
CN1	NT-BGKcLV04-1C
CN2	NT-BGKcLV04-2C
Rep1_qPCR	76.2
Rep2_qPCR	68.5
Rep1_WB	58.0
Rep2_WB	61.1
Antibody Cat#	A303-840A
Antibody Lot#	A303-840A
Antibody DCC ID	ENCAB855QRN
Status	Released
Project	ENCODE4
ID	885

Experiment Information (Status: NotSatisfied)

	BGKcLV04-25	BGKcLV04-26
idx	75	76
TRCN#_or_BGC#	BGC#0000048	BGC#0000048
shRNA_or_gRNA_sequence	CTTTCCAGAGGGCAGTGTAG	CTTTCCAGAGGGCAGTGTAG
PAM
Name	RPS3_3-4	RPS3_3-4
Sample_ID	BGKcLV04-25	BGKcLV04-26
transduction_Date	6/22/16	6/22/16
days	day 6	day 6
RBP_name	RPS3	RPS3
qPCR_result	76.2	68.5
Ave_qPCR	72.4
RT-qPCR_primer-F	GTGCGAGTTACACCAACCAG
RT-qPCR_primer-R	ACAGCAGTCAGTTCCCGAAT
protein_conc	1803	1908
WB_result	58.0	61.1
Ave_WB	59.5
WB_DONE_date	7/1/16	WES
MW	27 kDa
IP	1
antibody_Cat#	A303-840A	A303-840A
Antibody DCC ID	ENCAB855QRN	ENCAB855QRN
submitted_to_DCC_date	10/26/16
Rep1_TPM	539.2	0
Rep2_TPM	694.5	0
Action	Ready	Ready
Library_start_date	08/15/16	08/15/16
repeat_library	5/11/17	5/11/17
Note
ID	4173	4174

Western Blot

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
RPS3	Product_ID: A303-840A Lot_ID: 1 Source: Bethyl Labs Target Name: RPS3-human

Experiment Status

	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26	BGKcLV04-26
Sample_ID	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26	BGKcLV04-26
Sample Name	RPS3_BGKcLV04-25	RPS3-BGKcLV04-25B		RPS3_BGKcLV04-26	RPS3-BGKcLV04-26B
Sample Name	RPS3_BGKcLV04-25	RPS3-BGKcLV04-25B	RPS3-BGKcLV04-25C	RPS3_BGKcLV04-26	RPS3-BGKcLV04-26B	RPS3-BGKcLV04-26C
RBP	RPS3	RPS3	RPS3	RPS3	RPS3	RPS3
Cell_Line	K562	K562	K562	K562	K562	K562
Exp UID
Status	NotSatisfied	Released	Released	NotSatisfied	Released	Released
Status_date	2017-11-20	2017-11-20	2022-03-07	2017-11-20	2017-11-20	2022-03-07
Project	ENCODE3	ENCODE3	ENCODE4	ENCODE3	ENCODE3	ENCODE4
Note	Bad Correlation between replicates			Bad Correlation between replicates
ID	66	1347	10453	67	1348	10454

Library-Prep
Sequencing

Library-Prep Information

	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26	BGKcLV04-26
Sample #			73			74
Sample Name	RPS3-BGKcLV04-25	RPS3-BGKcLV04-25C	RPS3-BGKcLV04-25D	RPS3-BGKcLV04-26	RPS3-BGKcLV04-26C	RPS3-BGKcLV04-26D
Sample_Name_Alias	RPS3_BGKcLV04-25	RPS3-BGKcLV04-25B	RPS3-BGKcLV04-25C	RPS3_BGKcLV04-26	RPS3-BGKcLV04-26B	RPS3-BGKcLV04-26C
Index Well Position	S11	S18	S18	S12	S19	S19
Index_table	IDT_TruSeqSingleIndex_24	IDT_TruSeqSingleIndex_24	IDT_TruSeqSingleIndex_24	IDT_TruSeqSingleIndex_24	IDT_TruSeqSingleIndex_24	IDT_TruSeqSingleIndex_24
LibPrep_date	2016-08-15	2017-05-11	2018-11-19	2016-08-15	2017-05-11	2018-11-19
Lib_ID	Lib-160815	Lib-170511	Lib-181119	Lib-160815	Lib-170511	Lib-181119
Tecan_Location
Tecan
Tecan_date
Size_bp			292			294
Peak_Molarity			40.60			56.00
libSampleQC_DNA_Well	DNA_Library_LV37-38/set1/H2.png	DNA_Library_set39/set2/A7.png	DNA_Library_set41/set1/A9.png	DNA_Library_cLV04/set2/C1.png	DNA_Library_set39/set2/B7.png	DNA_Library_set41/set1/B9.png
RIN	8.8	8.8	8.8	8.9	8.9	8.9
libSample_RNA_Well	RNA_Library_cLV04-05/set1/A9.png	RNA_Library_cLV04-05/set1/A9.png	RNA_Library_cLV04-05/set1/A9.png	RNA_Library_cLV04-05/set1/B9.png	RNA_Library_cLV04-05/set1/B9.png	RNA_Library_cLV04-05/set1/B9.png
SampleQC_method			TapeStation			TapeStation
SampleQC_date			2022-03-01			2022-03-01
Sample_ID	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26	BGKcLV04-26
RBP	RPS3	RPS3	RPS3	RPS3	RPS3	RPS3
Batch_ID	BGKcLV04	BGKcLV04	BGKcLV04	BGKcLV04	BGKcLV04	BGKcLV04
WB_result	58.000	58.000	58.000	61.100	61.100	61.100
Library Description	TruSeq mRNA	TruSeq mRNA	TruSeq mRNA	TruSeq mRNA	TruSeq mRNA	TruSeq mRNA
Repeat_Library_Suffix		C	D		C	D
Lib_Status	SendToSequence	SendToSequence	SendToSequence	SendToSequence	SendToSequence	SendToSequence
Project	ENCODE3	ENCODE3	ENCODE4	ENCODE3	ENCODE3	ENCODE4
ID	3010	3042	3250	3011	3043	3251

Sequencing Information

	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26	BGKcLV04-26
Sample_ID	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26	BGKcLV04-26
Sample Name	RPS3_BGKcLV04-25	RPS3-BGKcLV04-25B	RPS3-BGKcLV04-25C	RPS3_BGKcLV04-26	RPS3-BGKcLV04-26B	RPS3-BGKcLV04-26C
Pool ID	Pool-161129	Pool-170911	Pool-181119	Pool-161129	Pool-170911	Pool-181119
LocalServer_folder	BGKcLV04	set39_K	set41_spikeins	BGKcLV04	set39_K	set41_spikeins
total_reads	98,896,990	55,055,430	323,713,018	15,743,438	83,385,998	392,019,692
total_aligned_reads	85,893,200	49,267,800	260,023,924	9,927,860	75,001,122	316,684,860
unique_aligned_reads	78,775,552	45,010,108	235,455,834	9,028,970	68,036,162	288,004,386
percent_uniqueAligned	0.79654	0.81754	0.72736	0.57351	0.81592	0.73467
correlation_replicates	0.472368	0.990444	0.996809	0.472368	0.990444	0.996809
spikein_reads	169,498	38	788,138	26,864	108	795,832
percent_spikeins	0.00171		0.00243	0.00171		0.00203
original_ReadLength	100	100	100	100	100	100
QC_Status	BadCorrelation	Submitted	Submitted	BadCorrelation	Submitted	Submitted
ID	1659	1679	1963	1660	1680	1964

Data Submission Information

	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26
ENCODE_alias	brenton-graveley:RPS3-BGKcLV04-B	brenton-graveley:RPS3-BGKcLV04-K562_A	brenton-graveley:RPS3-BGKcLV04-C	brenton-graveley:L-RPS3-BGKcLV04-25C	brenton-graveley:RPS3-BGKcLV04-K562	brenton-graveley:RPS3-BGKcLV04-25B	brenton-graveley:L-RPS3-BGKcLV04-26C	brenton-graveley:RPS3-BGKcLV04-26B
ENCODE_accession	ENCSR642GBC	ENCSR225PTB	ENCSR865UKM	ENCLB378QPE	ENCSR916GJJ	ENCBS640DOL	ENCLB893YIW	ENCBS515MKD
object_type	experiment	experiment	experiment	library	gene_silencing_series	biosample	library	biosample
assay_type	knockdown followed by RNA-seq	knockdown followed by RNA-seq	knockdown followed by RNA-seq	knockdown followed by RNA-seq	knockdown followed by RNA-seq	knockdown followed by RNA-seq	knockdown followed by RNA-seq	knockdown followed by RNA-seq
Sample_ID	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-25	BGKcLV04-26	BGKcLV04-26
Sample Name	RPS3-BGKcLV04-25B	RPS3-BGKcLV04-25B	RPS3-BGKcLV04-25C	RPS3-BGKcLV04-25C	RPS3-BGKcLV04-25C	RPS3-BGKcLV04-25B	RPS3-BGKcLV04-26C	RPS3-BGKcLV04-26B
Selected	Yes	No	Yes	Yes	Yes	Yes	Yes	Yes
Status	Released	Released	Released	Released	Released	Released	Released	Released
Status_Date	2022-03-07	2022-03-07	2022-03-07	2022-03-07	2022-03-07	2019-03-13	2022-03-07	2019-03-13
Project	ENCODE3	ENCODE3	ENCODE4	ENCODE4	ENCODE4	ENCODE4	ENCODE4	ENCODE4
				LV41_library_protocol_spikeins		LV39_biosample_protocol	LV41_library_protocol_spikeins	LV39_biosample_protocol
protocol_URL				L-RPS3-BGKcLV04-25C.pdf		RPS3-BGKcLV04-25B.pdf	L-RPS3-BGKcLV04-26C.pdf	RPS3-BGKcLV04-26B.pdf
ID	3213	6919	7384	7404	7419	7434	7405	7435

File Information

file_name	file_path	file_format	output_type	assay_type	lab	Sample ID	platform	read_length	run_type	paired_end	assembly	genome_annotation	derived_from	controlled_by	Project	FILE_ID
RPS3-BGKcLV04-25B_GTCCGC_ACBE67ANXX_L003_001.R1.fastq.gz	ENCODE_DATA/set39_K/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1679	HiSeq2500	100	paired-ended	1				NT-BGKcLV04-1B_ATGTCA_ACBE67ANXX_L003_001.R1.fastq.gz,NT-BGKcLV04-2B_CCGTCC_ACBE67ANXX_L003_001.R1.fastq.gz	ENCODE3	22480
RPS3-BGKcLV04-25B_GTCCGC_ACBE67ANXX_L003_001.R2.fastq.gz	ENCODE_DATA/set39_K/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1679	HiSeq2500	100	paired-ended	2				NT-BGKcLV04-1B_ATGTCA_ACBE67ANXX_L003_001.R2.fastq.gz,NT-BGKcLV04-2B_CCGTCC_ACBE67ANXX_L003_001.R2.fastq.gz	ENCODE3	22516
RPS3-BGKcLV04-25B_Aligned.sortedByCoord.out.bam	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bam	alignments	knockdown followed by RNA-seq	Graveley Lab	1679					GRCh38	V40	RPS3-BGKcLV04-25B_GTCCGC_ACBE67ANXX_L003_001.R1.fastq.gz,RPS3-BGKcLV04-25B_GTCCGC_ACBE67ANXX_L003_001.R2.fastq.gz		ENCORE2	22552
RPS3-BGKcLV04-25B_Signal.Unique.strand+.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig+unique	plus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1679					GRCh38	V40	RPS3-BGKcLV04-25B/Aligned.sortedByCoord.out.bam		ENCORE2	22588
RPS3-BGKcLV04-25B_Signal.Unique.strand-.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig-unique	minus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1679					GRCh38	V40	RPS3-BGKcLV04-25B/Aligned.sortedByCoord.out.bam		ENCORE2	22624
RPS3-BGKcLV04-25B_Signal.UniqueMultiple.strand+.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig+all	plus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1679					GRCh38	V40	RPS3-BGKcLV04-25B/Aligned.sortedByCoord.out.bam		ENCORE2	22660
RPS3-BGKcLV04-25B_Signal.UniqueMultiple.strand-.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig-all	minus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1679					GRCh38	V40	RPS3-BGKcLV04-25B/Aligned.sortedByCoord.out.bam		ENCORE2	22696
RPS3-BGKcLV04-25B_quant.sf	ENCODE_DATA/set39_K/salmon_ENCORE2	transcript_quantification	transcript quantifications	knockdown followed by RNA-seq	Graveley Lab	1679					GRCh38	V40	RPS3-BGKcLV04-25B_GTCCGC_ACBE67ANXX_L003_001.R1.fastq.gz,RPS3-BGKcLV04-25B_GTCCGC_ACBE67ANXX_L003_001.R2.fastq.gz		ENCORE2	22732
RPS3_BGKcLV04-25_GGCTAC_L004_001.R1.fastq.gz	ENCODE_DATA/BGKcLV04/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1659	HiSeq2500	100	paired-ended	1				NT_BGKcLV04-1_ACAGTG_L004_001.R1.fastq.gz,NT_BGKcLV04-2_GCCAAT_L004_001.R1.fastq.gz	ENCODE3	23062
RPS3_BGKcLV04-25_GGCTAC_L004_001.R2.fastq.gz	ENCODE_DATA/BGKcLV04/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1659	HiSeq2500	100	paired-ended	2				NT_BGKcLV04-1_ACAGTG_L004_001.R2.fastq.gz,NT_BGKcLV04-2_GCCAAT_L004_001.R2.fastq.gz	ENCODE3	23072
RPS3_BGKcLV04-25_Aligned.sortedByCoord.out.bam	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bam	alignments	knockdown followed by RNA-seq	Graveley Lab	1659					GRCh38	V40	RPS3_BGKcLV04-25_GGCTAC_L004_001.R1.fastq.gz,RPS3_BGKcLV04-25_GGCTAC_L004_001.R2.fastq.gz		ENCORE2	23082
RPS3_BGKcLV04-25_Signal.Unique.strand+.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig+unique	plus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1659					GRCh38	V40	RPS3_BGKcLV04-25/Aligned.sortedByCoord.out.bam		ENCORE2	23092
RPS3_BGKcLV04-25_Signal.Unique.strand-.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig-unique	minus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1659					GRCh38	V40	RPS3_BGKcLV04-25/Aligned.sortedByCoord.out.bam		ENCORE2	23102
RPS3_BGKcLV04-25_Signal.UniqueMultiple.strand+.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig+all	plus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1659					GRCh38	V40	RPS3_BGKcLV04-25/Aligned.sortedByCoord.out.bam		ENCORE2	23112
RPS3_BGKcLV04-25_Signal.UniqueMultiple.strand-.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig-all	minus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1659					GRCh38	V40	RPS3_BGKcLV04-25/Aligned.sortedByCoord.out.bam		ENCORE2	23122
RPS3_BGKcLV04-25_quant.sf	ENCODE_DATA/BGKcLV04/salmon_ENCORE2	transcript_quantification	transcript quantifications	knockdown followed by RNA-seq	Graveley Lab	1659					GRCh38	V40	RPS3_BGKcLV04-25_GGCTAC_L004_001.R1.fastq.gz,RPS3_BGKcLV04-25_GGCTAC_L004_001.R2.fastq.gz		ENCORE2	23132
RPS3-BGKcLV04-26B_GTGAAA_ACBE67ANXX_L003_001.R1.fastq.gz	ENCODE_DATA/set39_K/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1680	HiSeq2500	100	paired-ended	1				NT-BGKcLV04-1B_ATGTCA_ACBE67ANXX_L003_001.R1.fastq.gz,NT-BGKcLV04-2B_CCGTCC_ACBE67ANXX_L003_001.R1.fastq.gz	ENCODE3	22481
RPS3-BGKcLV04-26B_GTGAAA_ACBE67ANXX_L003_001.R2.fastq.gz	ENCODE_DATA/set39_K/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1680	HiSeq2500	100	paired-ended	2				NT-BGKcLV04-1B_ATGTCA_ACBE67ANXX_L003_001.R2.fastq.gz,NT-BGKcLV04-2B_CCGTCC_ACBE67ANXX_L003_001.R2.fastq.gz	ENCODE3	22517
RPS3-BGKcLV04-26B_Aligned.sortedByCoord.out.bam	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bam	alignments	knockdown followed by RNA-seq	Graveley Lab	1680					GRCh38	V40	RPS3-BGKcLV04-26B_GTGAAA_ACBE67ANXX_L003_001.R1.fastq.gz,RPS3-BGKcLV04-26B_GTGAAA_ACBE67ANXX_L003_001.R2.fastq.gz		ENCORE2	22553
RPS3-BGKcLV04-26B_Signal.Unique.strand+.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig+unique	plus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1680					GRCh38	V40	RPS3-BGKcLV04-26B/Aligned.sortedByCoord.out.bam		ENCORE2	22589
RPS3-BGKcLV04-26B_Signal.Unique.strand-.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig-unique	minus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1680					GRCh38	V40	RPS3-BGKcLV04-26B/Aligned.sortedByCoord.out.bam		ENCORE2	22625
RPS3-BGKcLV04-26B_Signal.UniqueMultiple.strand+.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig+all	plus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1680					GRCh38	V40	RPS3-BGKcLV04-26B/Aligned.sortedByCoord.out.bam		ENCORE2	22661
RPS3-BGKcLV04-26B_Signal.UniqueMultiple.strand-.bw	ENCODE_DATA/set39_K/STAR_ENCORE2_file_links	bigWig-all	minus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1680					GRCh38	V40	RPS3-BGKcLV04-26B/Aligned.sortedByCoord.out.bam		ENCORE2	22697
RPS3-BGKcLV04-26B_quant.sf	ENCODE_DATA/set39_K/salmon_ENCORE2	transcript_quantification	transcript quantifications	knockdown followed by RNA-seq	Graveley Lab	1680					GRCh38	V40	RPS3-BGKcLV04-26B_GTGAAA_ACBE67ANXX_L003_001.R1.fastq.gz,RPS3-BGKcLV04-26B_GTGAAA_ACBE67ANXX_L003_001.R2.fastq.gz		ENCORE2	22733
RPS3_BGKcLV04-26_CTTGTA_L004_001.R1.fastq.gz	ENCODE_DATA/BGKcLV04/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1660	HiSeq2500	100	paired-ended	1				NT_BGKcLV04-1_ACAGTG_L004_001.R1.fastq.gz,NT_BGKcLV04-2_GCCAAT_L004_001.R1.fastq.gz	ENCODE3	23063
RPS3_BGKcLV04-26_CTTGTA_L004_001.R2.fastq.gz	ENCODE_DATA/BGKcLV04/fastq	fastq	reads	knockdown followed by RNA-seq	Graveley Lab	1660	HiSeq2500	100	paired-ended	2				NT_BGKcLV04-1_ACAGTG_L004_001.R2.fastq.gz,NT_BGKcLV04-2_GCCAAT_L004_001.R2.fastq.gz	ENCODE3	23073
RPS3_BGKcLV04-26_Aligned.sortedByCoord.out.bam	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bam	alignments	knockdown followed by RNA-seq	Graveley Lab	1660					GRCh38	V40	RPS3_BGKcLV04-26_CTTGTA_L004_001.R1.fastq.gz,RPS3_BGKcLV04-26_CTTGTA_L004_001.R2.fastq.gz		ENCORE2	23083
RPS3_BGKcLV04-26_Signal.Unique.strand+.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig+unique	plus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1660					GRCh38	V40	RPS3_BGKcLV04-26/Aligned.sortedByCoord.out.bam		ENCORE2	23093
RPS3_BGKcLV04-26_Signal.Unique.strand-.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig-unique	minus strand signal of unique reads	knockdown followed by RNA-seq	Graveley Lab	1660					GRCh38	V40	RPS3_BGKcLV04-26/Aligned.sortedByCoord.out.bam		ENCORE2	23103
RPS3_BGKcLV04-26_Signal.UniqueMultiple.strand+.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig+all	plus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1660					GRCh38	V40	RPS3_BGKcLV04-26/Aligned.sortedByCoord.out.bam		ENCORE2	23113
RPS3_BGKcLV04-26_Signal.UniqueMultiple.strand-.bw	ENCODE_DATA/BGKcLV04/STAR_ENCORE2_file_links	bigWig-all	minus strand signal of all reads	knockdown followed by RNA-seq	Graveley Lab	1660					GRCh38	V40	RPS3_BGKcLV04-26/Aligned.sortedByCoord.out.bam		ENCORE2	23123
RPS3_BGKcLV04-26_quant.sf	ENCODE_DATA/BGKcLV04/salmon_ENCORE2	transcript_quantification	transcript quantifications	knockdown followed by RNA-seq	Graveley Lab	1660					GRCh38	V40	RPS3_BGKcLV04-26_CTTGTA_L004_001.R1.fastq.gz,RPS3_BGKcLV04-26_CTTGTA_L004_001.R2.fastq.gz		ENCORE2	23133