| FKBP4_BGKLV21_11_17562_CAGATC_L001_R1_001.fastq.gz | ENCODE_DATA/set21/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1040 | HiSeq2000 | 100 | paired-ended | 1 | | | | non-target_BGKLV21_1_ATCACG_R1_001.fastq.gz,non-target_BGKLV21_2_CGATGT_R1_001.fastq.gz | ENCODE3 | | 15924 |
| FKBP4_BGKLV21_11_17562_CAGATC_L001_R2_001.fastq.gz | ENCODE_DATA/set21/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1040 | HiSeq2000 | 100 | paired-ended | 2 | | | | non-target_BGKLV21_1_ATCACG_R2_001.fastq.gz,non-target_BGKLV21_2_CGATGT_R2_001.fastq.gz | ENCODE3 | | 15968 |
| FKBP4_BGKLV21_11_17562_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 1040 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_11_17562_CAGATC_L001_R1_001.fastq.gz,FKBP4_BGKLV21_11_17562_CAGATC_L001_R2_001.fastq.gz | | ENCORE2 | | 16012 |
| FKBP4_BGKLV21_11_17562_Signal.Unique.strand+.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1040 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_11_17562/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16056 |
| FKBP4_BGKLV21_11_17562_Signal.Unique.strand-.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1040 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_11_17562/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16100 |
| FKBP4_BGKLV21_11_17562_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1040 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_11_17562/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16144 |
| FKBP4_BGKLV21_11_17562_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1040 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_11_17562/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16188 |
| FKBP4_BGKLV21_11_17562_quant.sf | ENCODE_DATA/set21/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 1040 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_11_17562_CAGATC_L001_R1_001.fastq.gz,FKBP4_BGKLV21_11_17562_CAGATC_L001_R2_001.fastq.gz | | ENCORE2 | | 16232 |
| FKBP4_BGKLV21_12_17563_ACTTGA_L001_R1_001.fastq.gz | ENCODE_DATA/set21/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1041 | HiSeq2000 | 100 | paired-ended | 1 | | | | non-target_BGKLV21_1_ATCACG_R1_001.fastq.gz,non-target_BGKLV21_2_CGATGT_R1_001.fastq.gz | ENCODE3 | | 15925 |
| FKBP4_BGKLV21_12_17563_ACTTGA_L001_R2_001.fastq.gz | ENCODE_DATA/set21/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 1041 | HiSeq2000 | 100 | paired-ended | 2 | | | | non-target_BGKLV21_1_ATCACG_R2_001.fastq.gz,non-target_BGKLV21_2_CGATGT_R2_001.fastq.gz | ENCODE3 | | 15969 |
| FKBP4_BGKLV21_12_17563_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 1041 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_12_17563_ACTTGA_L001_R1_001.fastq.gz,FKBP4_BGKLV21_12_17563_ACTTGA_L001_R2_001.fastq.gz | | ENCORE2 | | 16013 |
| FKBP4_BGKLV21_12_17563_Signal.Unique.strand+.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1041 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_12_17563/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16057 |
| FKBP4_BGKLV21_12_17563_Signal.Unique.strand-.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 1041 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_12_17563/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16101 |
| FKBP4_BGKLV21_12_17563_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1041 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_12_17563/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16145 |
| FKBP4_BGKLV21_12_17563_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set21/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 1041 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_12_17563/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 16189 |
| FKBP4_BGKLV21_12_17563_quant.sf | ENCODE_DATA/set21/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 1041 | | | | | GRCh38 | V40 | FKBP4_BGKLV21_12_17563_ACTTGA_L001_R1_001.fastq.gz,FKBP4_BGKLV21_12_17563_ACTTGA_L001_R2_001.fastq.gz | | ENCORE2 | | 16233 |