HNRNPD      CRISPR in HepG2      Batch: BGHcLV47

Experiment Information (Status: Sequenced)
BGHcLV47-39BGHcLV47-40
idx00
TRCN#_or_BGC#BGC#0000192BGC#0000192
shRNA_or_gRNA_sequenceGTCGGAGGAGCAGTTCGGCGGTCGGAGGAGCAGTTCGGCG
PAMGGGGGG
NameHNRNPD-93FHNRNPD-93F
Sample_IDBGHcLV47-39BGHcLV47-40
transduction_Date1/28/251/28/25
daysD6D6
RBP_nameHNRNPDHNRNPD
qPCR_result68.157.1
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc44713965
WB_result93.796.9
Ave_WB
WB_DONE_date3/11/25
MW38kdTUBULIN
IPfu's #18
antibody_Cat##12382lot # 1
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID98269827




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHcLV47-39BGHcLV47-40
Sample_IDBGHcLV47-39BGHcLV47-40
Sample Name
Sample NameHNRNPD-BGHcLV47-39HNRNPD-BGHcLV47-40
RBPHNRNPDHNRNPD
Cell_LineHepG2HepG2
Exp UID
StatusSequencedSequenced
Status_date2025-05-142025-05-14
ProjectENCORE2ENCORE2
Note
ID1416014161




Library-Prep Information
BGHcLV47-39BGHcLV47-40
Sample #1314
Sample NameHNRNPD-BGHcLV47-39HNRNPD-BGHcLV47-40
Sample_Name_Alias
Index Well PositionE09F09
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2025-04-232025-04-23
Lib_IDLib-250423Lib-250423
Tecan_Location
Tecan
Tecan_date
Size_bp260267
Peak_Molarity55.9036.00
libSampleQC_DNA_Well
RIN
libSample_RNA_Well
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2025-04-222025-04-22
Sample_IDBGHcLV47-39BGHcLV47-40
RBPHNRNPDHNRNPD
Batch_IDBGHcLV47BGHcLV47
WB_result93.70096.900
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID47244725




Sequencing Information
BGHcLV47-39BGHcLV47-40
Sample_IDBGHcLV47-39BGHcLV47-40
Sample NameHNRNPD-BGHcLV47-39HNRNPD-BGHcLV47-40
Pool IDPool-250422Pool-250422
LocalServer_folder
total_reads00
total_aligned_reads00
unique_aligned_reads00
percent_uniqueAligned
correlation_replicates
spikein_reads00
percent_spikeins
original_ReadLength
QC_StatusReadyToQCReadyToQC
ID34273428




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database