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BCLAF1 RNA-Seq in HepG2



BCLAF1      CRISPR in HepG2      Control:

General Information
RBPBCLAF1
Cell_LineHepG2
MethodCRISPR
Exp_NameBCLAF1-BGHcLV41-HepG2
ENCODE_series_ID
Batch_IDBGHcLV41
Pool IDPool-240314
Local_Set_Nameset70
ENCODE_KD_Exp_ID
ENCODE_CN_Exp_ID
Rep1BCLAF1-BGHcLV41-3
Rep2BCLAF1-BGHcLV41-4
CN1NT-BGHcLV41-1
CN2NT-BGHcLV41-2
Rep1_qPCR69.5
Rep2_qPCR76.2
Rep1_WBneed discussion
Rep2_WB
Antibody Cat#A300-608A
Antibody Lot#lot # 2
Antibody DCC ID
StatusSubmitted
ProjectENCORE2
ID1445




Experiment Information (Status: Submitting)
BGHcLV41-3BGHcLV41-4
idx12701271
TRCN#_or_BGC#BGC#0000892BGC#0000892
shRNA_or_gRNA_sequenceTACCTGTTAGAATCATCAAGTACCTGTTAGAATCATCAAG
PAMAGGAGG
NameBCLAF1_69BCLAF1_69
Sample_IDBGHcLV41-3BGHcLV41-4
transduction_Date1/12/241/12/24
daysD6D6
RBP_nameBCLAF1BCLAF1
qPCR_result69.576.2
Ave_qPCR72.9
RT-qPCR_primer-Faatggcacctgttcctcttg
RT-qPCR_primer-Rggatcggaattcttgctcct
protein_conc32683095
WB_resultneed discussion
Ave_WB
WB_DONE_date1/
MW106kd
IP
antibody_Cat#A300-608Alot # 2
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Notecheck result befor releasecheck result befor release
ID74617462




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHcLV41-3BGHcLV41-4
Sample_IDBGHcLV41-3BGHcLV41-4
Sample Name
Sample NameBCLAF1-BGHcLV41-3BCLAF1-BGHcLV41-4
RBPBCLAF1BCLAF1
Cell_LineHepG2HepG2
Exp UID
StatusSubmittingSubmitting
Status_date2024-09-202024-09-20
ProjectENCORE2ENCORE2
Note
ID1295012951




Library-Prep Information
BGHcLV41-3BGHcLV41-4
Sample #34
Sample NameBCLAF1-BGHcLV41-3BCLAF1-BGHcLV41-4
Sample_Name_Alias
Index Well PositionC01D01
Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
LibPrep_date2024-03-012024-03-01
Lib_IDLib-240301Lib-240301
Tecan_Location
Tecan
Tecan_date
Size_bp302299
Peak_Molarity68.7087.10
libSampleQC_DNA_WellDNA_Library_set70/set1/C1.pngDNA_Library_set70/set1/D1.png
RIN9.69.4
libSample_RNA_WellRNA_Library_set70/set1/G6.pngRNA_Library_set70/set1/H6.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-03-142024-03-14
Sample_IDBGHcLV41-3BGHcLV41-4
RBPBCLAF1BCLAF1
Batch_IDBGHcLV41BGHcLV41
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID42284229




Sequencing Information
BGHcLV41-3BGHcLV41-4
Sample_IDBGHcLV41-3BGHcLV41-4
Sample NameBCLAF1-BGHcLV41-3BCLAF1-BGHcLV41-4
Pool IDPool-240314Pool-240314
LocalServer_folderset70set70
total_reads27,296,64035,947,359
total_aligned_reads23,484,52232,508,453
unique_aligned_reads22,207,78030,678,342
percent_uniqueAligned0.813570.85342
correlation_replicates0.9916050.991605
spikein_reads6,0541,252
percent_spikeins0.000220.00003
original_ReadLength151151
QC_StatusSubmittingSubmitting
ID29472948




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database