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EFL1 RNA-Seq in HepG2



EFL1      CRISPR in HepG2      Control:

General Information
RBPEFL1
Cell_LineHepG2
MethodCRISPR
Exp_NameEFL1-BGHcLV41-HepG2
ENCODE_series_ID
Batch_IDBGHcLV41
Pool IDPool-240314
Local_Set_Nameset70
ENCODE_KD_Exp_ID
ENCODE_CN_Exp_ID
Rep1EFL1-BGHcLV41-23
Rep2EFL1-BGHcLV41-24
CN1NT-BGHcLV41-1
CN2NT-BGHcLV41-2
Rep1_qPCR41.3
Rep2_qPCR24.7
Rep1_WB
Rep2_WB
Antibody Cat#A305-854A-M
Antibody Lot#lot # 1
Antibody DCC ID
StatusSubmitted
ProjectENCORE2
ID1448




Experiment Information (Status: Submitting)
BGHcLV41-23BGHcLV41-24
idx12901291
TRCN#_or_BGC#BGC#0000954BGC#0000954
shRNA_or_gRNA_sequenceTATATAGTAATCTCCCCACATATATAGTAATCTCCCCACA
PAMAGGAGG
NameEFTUD1_80EFTUD1_80
Sample_IDBGHcLV41-23BGHcLV41-24
transduction_Date1/12/241/12/24
daysD6D6
RBP_nameEFL1EFL1
qPCR_result41.324.7
Ave_qPCR33.0
RT-qPCR_primer-Fcccatatcccatgctgttct
RT-qPCR_primer-Rtgcttgagtttctggtggaa
protein_conc29743598
WB_result
Ave_WB
WB_DONE_date1/25/24,2/5/24
MW125KD
IP
antibody_Cat#A305-854A-Mlot # 1
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Notecheck result befor releasecheck result befor release
ID74817482




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHcLV41-23BGHcLV41-24
Sample_IDBGHcLV41-23BGHcLV41-24
Sample Name
Sample NameEFL1-BGHcLV41-23EFL1-BGHcLV41-24
RBPEFL1EFL1
Cell_LineHepG2HepG2
Exp UID
StatusSubmittingSubmitting
Status_date2024-09-202024-09-20
ProjectENCORE2ENCORE2
Note
ID1295612957




Library-Prep Information
BGHcLV41-23BGHcLV41-24
Sample #910
Sample NameEFL1-BGHcLV41-23EFL1-BGHcLV41-24
Sample_Name_Alias
Index Well PositionA02B02
Index_tableIDT_UniqueDualIndex_96IDT_UniqueDualIndex_96
LibPrep_date2024-03-012024-03-01
Lib_IDLib-240301Lib-240301
Tecan_Location
Tecan
Tecan_date
Size_bp294293
Peak_Molarity86.3094.80
libSampleQC_DNA_WellDNA_Library_set70/set1/A2.pngDNA_Library_set70/set1/B2.png
RIN9.89.9
libSample_RNA_WellRNA_Library_set70/set1/E7.pngRNA_Library_set70/set1/F7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-03-142024-03-14
Sample_IDBGHcLV41-23BGHcLV41-24
RBPEFL1EFL1
Batch_IDBGHcLV41BGHcLV41
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID42344235




Sequencing Information
BGHcLV41-23BGHcLV41-24
Sample_IDBGHcLV41-23BGHcLV41-24
Sample NameEFL1-BGHcLV41-23EFL1-BGHcLV41-24
Pool IDPool-240314Pool-240314
LocalServer_folderset70set70
total_reads27,875,56636,703,650
total_aligned_reads23,460,82533,098,306
unique_aligned_reads22,112,21831,216,239
percent_uniqueAligned0.793250.85049
correlation_replicates0.9986630.998663
spikein_reads5,0261,192
percent_spikeins0.000180.00003
original_ReadLength151151
QC_StatusSubmittingSubmitting
ID29532954




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database