PHF6_BGHLV18_39_ACTGAT_L003_R1_001.fastq.gz | ENCODE_DATA/set18/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 964 | HiSeq2000 | 100 | paired-ended | 1 | | | | NT_BGHLV18_1_ATCACG_L008_R1_001.fastq.gz,NT_BGHLV18_2_CGATGT_L008_R1_001.fastq.gz | ENCODE3 | | 14812 |
PHF6_BGHLV18_39_ACTGAT_L003_R2_001.fastq.gz | ENCODE_DATA/set18/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 964 | HiSeq2000 | 100 | paired-ended | 2 | | | | NT_BGHLV18_1_ATCACG_L008_R2_001.fastq.gz,NT_BGHLV18_2_CGATGT_L008_R2_001.fastq.gz | ENCODE3 | | 14850 |
PHF6_BGHLV18_39_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 964 | | | | | GRCh38 | V40 | PHF6_BGHLV18_39_ACTGAT_L003_R1_001.fastq.gz,PHF6_BGHLV18_39_ACTGAT_L003_R2_001.fastq.gz | | ENCORE2 | | 14888 |
PHF6_BGHLV18_39_Signal.Unique.strand+.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 964 | | | | | GRCh38 | V40 | PHF6_BGHLV18_39/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 14926 |
PHF6_BGHLV18_39_Signal.Unique.strand-.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 964 | | | | | GRCh38 | V40 | PHF6_BGHLV18_39/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 14964 |
PHF6_BGHLV18_39_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 964 | | | | | GRCh38 | V40 | PHF6_BGHLV18_39/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 15002 |
PHF6_BGHLV18_39_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 964 | | | | | GRCh38 | V40 | PHF6_BGHLV18_39/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 15040 |
PHF6_BGHLV18_39_quant.sf | ENCODE_DATA/set18/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 964 | | | | | GRCh38 | V40 | PHF6_BGHLV18_39_ACTGAT_L003_R1_001.fastq.gz,PHF6_BGHLV18_39_ACTGAT_L003_R2_001.fastq.gz | | ENCORE2 | | 15078 |
PHF6_BGHLV18_40_ATTCCT_L003_R1_001.fastq.gz | ENCODE_DATA/set18/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 965 | HiSeq2000 | 100 | paired-ended | 1 | | | | NT_BGHLV18_1_ATCACG_L008_R1_001.fastq.gz,NT_BGHLV18_2_CGATGT_L008_R1_001.fastq.gz | ENCODE3 | | 14813 |
PHF6_BGHLV18_40_ATTCCT_L003_R2_001.fastq.gz | ENCODE_DATA/set18/fastq | fastq | reads | knockdown followed by RNA-seq | Graveley Lab | 965 | HiSeq2000 | 100 | paired-ended | 2 | | | | NT_BGHLV18_1_ATCACG_L008_R2_001.fastq.gz,NT_BGHLV18_2_CGATGT_L008_R2_001.fastq.gz | ENCODE3 | | 14851 |
PHF6_BGHLV18_40_Aligned.sortedByCoord.out.bam | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bam | alignments | knockdown followed by RNA-seq | Graveley Lab | 965 | | | | | GRCh38 | V40 | PHF6_BGHLV18_40_ATTCCT_L003_R1_001.fastq.gz,PHF6_BGHLV18_40_ATTCCT_L003_R2_001.fastq.gz | | ENCORE2 | | 14889 |
PHF6_BGHLV18_40_Signal.Unique.strand+.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig+unique | plus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 965 | | | | | GRCh38 | V40 | PHF6_BGHLV18_40/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 14927 |
PHF6_BGHLV18_40_Signal.Unique.strand-.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig-unique | minus strand signal of unique reads | knockdown followed by RNA-seq | Graveley Lab | 965 | | | | | GRCh38 | V40 | PHF6_BGHLV18_40/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 14965 |
PHF6_BGHLV18_40_Signal.UniqueMultiple.strand+.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig+all | plus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 965 | | | | | GRCh38 | V40 | PHF6_BGHLV18_40/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 15003 |
PHF6_BGHLV18_40_Signal.UniqueMultiple.strand-.bw | ENCODE_DATA/set18/STAR_ENCORE2_file_links | bigWig-all | minus strand signal of all reads | knockdown followed by RNA-seq | Graveley Lab | 965 | | | | | GRCh38 | V40 | PHF6_BGHLV18_40/Aligned.sortedByCoord.out.bam | | ENCORE2 | | 15041 |
PHF6_BGHLV18_40_quant.sf | ENCODE_DATA/set18/salmon_ENCORE2 | transcript_quantification | transcript quantifications | knockdown followed by RNA-seq | Graveley Lab | 965 | | | | | GRCh38 | V40 | PHF6_BGHLV18_40_ATTCCT_L003_R1_001.fastq.gz,PHF6_BGHLV18_40_ATTCCT_L003_R2_001.fastq.gz | | ENCORE2 | | 15079 |