RPS3      shRNA in HepG2      Batch: BGHLV14

Experiment Information (Status: NotSatisfied)
BGHLV14-43BGHLV14-44
idx139140
TRCN#_or_BGC#TRCN0000005165TRCN0000005165
shRNA_or_gRNA_sequenceGCCACCAGAACACAGAATGTTGCCACCAGAACACAGAATGTT
PAM
NameRPS3RPS3
Sample_IDBGHLV14-43BGHLV14-44
transduction_Date7/4/20147/4/2014
days
RBP_nameRPS3RPS3
qPCR_result61.272.6
Ave_qPCR66.9
RT-qPCR_primer-FGTGCGAGTTACACCAACCAG
RT-qPCR_primer-RACAGCAGTCAGTTCCCGAAT
protein_conc26092630
WB_result14.943.7
Ave_WB29.3
WB_DONE_date
MW
IP11
antibody_Cat#A303-840AA303-840A
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM389.10
Rep2_TPM434.70
Action
Library_start_date8/12/20148/12/2014
repeat_library
Note
ID21982199




Western Blot
Western Blot info was not avaliable




Experiment Status
BGHLV14-43BGHLV14-44
Sample_IDBGHLV14-43BGHLV14-44
Sample NameRPS3_BGHLV14-43RPS3_BGHLV14-44
Sample NameRPS3_BGHLV14-43RPS3_BGHLV14-44
RBPRPS3RPS3
Cell_LineHepG2HepG2
Exp UID
StatusNotSatisfiedNotSatisfied
Status_date2014-11-042014-11-04
ProjectENCODE3ENCODE3
NoteBad Correlation between replicatesBad Correlation between replicates
ID1819




Library-Prep Information
BGHLV14-43BGHLV14-44
Sample #
Sample NameRPS3-BGHLV14-43RPS3-BGHLV14-44
Sample_Name_AliasRPS3_BGHLV14-43RPS3_BGHLV14-44
Index Well PositionS22S23
Index_tableIDT_TruSeqSingleIndex_24IDT_TruSeqSingleIndex_24
LibPrep_date2014-08-122014-08-12
Lib_IDLib-140812Lib-140812
Tecan_Location
Tecan
Tecan_date
Size_bp
Peak_Molarity
libSampleQC_DNA_WellDNA_Library_LV13-14/set1/F12.pngDNA_Library_LV13-14/set1/G12.png
RIN9.19.2
libSample_RNA_WellRNA_Library_LV13-14-16/set1/G8.pngRNA_Library_LV13-14-16/set1/H8.png
SampleQC_methodTapeStationTapeStation
SampleQC_date
Sample_IDBGHLV14-43BGHLV14-44
RBPRPS3RPS3
Batch_IDBGHLV14BGHLV14
WB_result14.90043.700
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCODE3ENCODE3
ID22122213




Sequencing Information
BGHLV14-43BGHLV14-44
Sample_IDBGHLV14-43BGHLV14-44
Sample NameRPS3_BGHLV14-43RPS3_BGHLV14-44
Pool IDPool-140915Pool-140915
LocalServer_folderset14set14
total_reads49,950,00051,980,000
total_aligned_reads42,898,98241,276,292
unique_aligned_reads40,572,31639,224,124
percent_uniqueAligned0.812260.75460
correlation_replicates0.8678660.867866
spikein_reads249,234193,638
percent_spikeins0.004990.00373
original_ReadLength100100
QC_StatusBadCorrelationBadCorrelation
ID854855




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database