Home
NEWS
Summary
Data Files
Search
FAQ
Admin Login
Top
RPS3
shRNA
in HepG2
Batch: BGHLV14
Experiment Information
Sequencing Information
Data Submission
Files
Experiment Information
Western Blot
Experiment Status
Experiment Information (Status:
NotSatisfied
)
BGHLV14-43
BGHLV14-44
idx
139
140
TRCN#_or_BGC#
TRCN0000005165
TRCN0000005165
shRNA_or_gRNA_sequence
GCCACCAGAACACAGAATGTT
GCCACCAGAACACAGAATGTT
PAM
Name
RPS3
RPS3
Sample_ID
BGHLV14-43
BGHLV14-44
transduction_Date
7/4/2014
7/4/2014
days
RBP_name
RPS3
RPS3
qPCR_result
61.2
72.6
Ave_qPCR
66.9
RT-qPCR_primer-F
GTGCGAGTTACACCAACCAG
RT-qPCR_primer-R
ACAGCAGTCAGTTCCCGAAT
protein_conc
2609
2630
WB_result
14.9
43.7
Ave_WB
29.3
WB_DONE_date
MW
IP
1
1
antibody_Cat#
A303-840A
A303-840A
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM
389.1
0
Rep2_TPM
434.7
0
Action
Library_start_date
8/12/2014
8/12/2014
repeat_library
Note
ID
2198
2199
Western Blot
Western Blot info was not avaliable
Experiment Status
BGHLV14-43
BGHLV14-44
Sample_ID
BGHLV14-43
BGHLV14-44
Sample Name
RPS3_BGHLV14-43
RPS3_BGHLV14-44
Sample Name
RPS3_BGHLV14-43
RPS3_BGHLV14-44
RBP
RPS3
RPS3
Cell_Line
HepG2
HepG2
Exp UID
Status
NotSatisfied
NotSatisfied
Status_date
2014-11-04
2014-11-04
Project
ENCODE3
ENCODE3
Note
Bad Correlation between replicates
Bad Correlation between replicates
ID
18
19
Library-Prep
Sequencing
Library-Prep Information
BGHLV14-43
BGHLV14-44
Sample #
Sample Name
RPS3-BGHLV14-43
RPS3-BGHLV14-44
Sample_Name_Alias
RPS3_BGHLV14-43
RPS3_BGHLV14-44
Index Well Position
S22
S23
Index_table
IDT_TruSeqSingleIndex_24
IDT_TruSeqSingleIndex_24
LibPrep_date
2014-08-12
2014-08-12
Lib_ID
Lib-140812
Lib-140812
Tecan_Location
Tecan
Tecan_date
Size_bp
Peak_Molarity
libSampleQC_DNA_Well
DNA_Library_LV13-14/set1/F12.png
DNA_Library_LV13-14/set1/G12.png
RIN
9.1
9.2
libSample_RNA_Well
RNA_Library_LV13-14-16/set1/G8.png
RNA_Library_LV13-14-16/set1/H8.png
SampleQC_method
TapeStation
TapeStation
SampleQC_date
Sample_ID
BGHLV14-43
BGHLV14-44
RBP
RPS3
RPS3
Batch_ID
BGHLV14
BGHLV14
WB_result
14.900
43.700
Library Description
TruSeq mRNA
TruSeq mRNA
Repeat_Library_Suffix
Lib_Status
SendToSequence
SendToSequence
Project
ENCODE3
ENCODE3
ID
2212
2213
Sequencing Information
BGHLV14-43
BGHLV14-44
Sample_ID
BGHLV14-43
BGHLV14-44
Sample Name
RPS3_BGHLV14-43
RPS3_BGHLV14-44
Pool ID
Pool-140915
Pool-140915
LocalServer_folder
set14
set14
total_reads
49,950,000
51,980,000
total_aligned_reads
42,898,982
41,276,292
unique_aligned_reads
40,572,316
39,224,124
percent_uniqueAligned
0.81226
0.75460
correlation_replicates
0.867866
0.867866
spikein_reads
249,234
193,638
percent_spikeins
0.00499
0.00373
original_ReadLength
100
100
QC_Status
BadCorrelation
BadCorrelation
ID
854
855
Data Submission Information
DCC submission information was not avaliable
File Information
Files of the experiment was not avaliable in the database
Back