non-target      shRNA in 293T      Batch: BG293LV06

General Information

List KD experiments controlled by BG293LV06-73 and BG293LV06-74


NT-BG293LV06-73,NT-BG293LV06-74:No KD experiments controlled by NT-BG293LV06-73 and NT-BG293LV06-74 are available on the database

NT-BG293LV06-73B,NT-BG293LV06-74B:No KD experiments controlled by NT-BG293LV06-73B and NT-BG293LV06-74B are available on the database

NT-BG293LV06-73C,NT-BG293LV06-74C:No KD experiments controlled by NT-BG293LV06-73C and NT-BG293LV06-74C are available on the database




Experiment Information (Status: Sequenced)
BG293LV06-73BG293LV06-74
idx00
TRCN#_or_BGC#
shRNA_or_gRNA_sequence
PAM
Namenon-targetnon-target
Sample_IDBG293LV06-73BG293LV06-74
transduction_Date9/5/249/5/24
daysD4D4
RBP_namenon-targetnon-target
qPCR_result
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1016010161




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-73BG293LV06-73BG293LV06-73BG293LV06-74BG293LV06-74BG293LV06-74
Sample_IDBG293LV06-73BG293LV06-73BG293LV06-73BG293LV06-74BG293LV06-74BG293LV06-74
Sample Name
Sample NameNT-BG293LV06-73NT-BG293LV06-73BNT-BG293LV06-73CNT-BG293LV06-74NT-BG293LV06-74BNT-BG293LV06-74C
RBPnon-targetnon-targetnon-targetnon-targetnon-targetnon-target
Cell_Line293T293T293T293T293T293T
Exp UID
StatusSequencedSequencedSequencedSequencedSequencedSequenced
Status_date2024-10-162024-10-162024-10-162024-10-162024-10-162024-10-16
ProjectENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2
Note
ID135101356813576135111356913577




Library-Prep Information
BG293LV06-73BG293LV06-73BG293LV06-73BG293LV06-74BG293LV06-74BG293LV06-74
Sample #5131561326
Sample NameNT-BG293LV06-73NT-BG293LV06-73BNT-BG293LV06-73CNT-BG293LV06-74NT-BG293LV06-74BNT-BG293LV06-74C
Sample_Name_Alias
Index Well PositionE01E01E10F01F01F10
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-10-022024-10-022024-09-252024-10-022024-10-02
Lib_IDLib-240925BLib-241002Lib-241002Lib-240925BLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp301275283281286284
Peak_Molarity79.20113.0099.4078.5082.5082.80
libSampleQC_DNA_WellDNA_Library_set71/set1/E1.pngDNA_Library_set72/set1/E1.pngDNA_Library_set72/set1/E1.pngDNA_Library_set71/set1/F1.pngDNA_Library_set72/set1/F1.pngDNA_Library_set72/set1/F1.png
RIN10.010.010.010.010.010.0
libSample_RNA_WellRNA_Library_set71/set1/E1.pngRNA_Library_set72/set1/E1.pngRNA_Library_set72/set1/E1.pngRNA_Library_set71/set1/F1.pngRNA_Library_set72/set1/F1.pngRNA_Library_set72/set1/F1.png
SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-10-042024-10-042024-09-302024-10-042024-10-04
Sample_IDBG293LV06-73BG293LV06-73BG293LV06-73BG293LV06-74BG293LV06-74BG293LV06-74
RBPNTNTNTNTNTNT
Batch_IDBG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06
WB_result0.0000.0000.0000.0000.0000.000
Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBCBC
Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequence
ProjectENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2
ID443045564564443145574565




Sequencing Information
BG293LV06-73BG293LV06-73BG293LV06-73BG293LV06-74BG293LV06-74BG293LV06-74
Sample_IDBG293LV06-73BG293LV06-73BG293LV06-73BG293LV06-74BG293LV06-74BG293LV06-74
Sample NameNT-BG293LV06-73NT-BG293LV06-73BNT-BG293LV06-73CNT-BG293LV06-74NT-BG293LV06-74BNT-BG293LV06-74C
Pool IDPool-240930Pool-241004Pool-241004Pool-240930Pool-241004Pool-241004
LocalServer_folderset71set72set72set71set72set72
total_reads32,342,82547,723,25326,042,54623,182,98824,255,67322,202,552
total_aligned_reads28,870,88042,947,79424,319,65119,431,84021,337,04420,410,737
unique_aligned_reads26,892,94939,910,71822,577,58918,045,95919,897,21618,958,382
percent_uniqueAligned0.831500.836300.866950.778410.820310.85388
correlation_replicates0.9951560.9909060.9928770.9951560.9909060.992877
spikein_reads85,808154,70053,64466,1807,03651,328
percent_spikeins0.002650.003240.002060.002850.000290.00231
original_ReadLength101101101101101101
QC_StatusReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmit
ID299931253133300031263134




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database