non-target      shRNA in 293T      Batch: BG293LV06

General Information

List KD experiments controlled by BG293LV06-37 and BG293LV06-38


NT-BG293LV06-37,NT-BG293LV06-38:No KD experiments controlled by NT-BG293LV06-37 and NT-BG293LV06-38 are available on the database

NT-BG293LV06-37B,NT-BG293LV06-38B:No KD experiments controlled by NT-BG293LV06-37B and NT-BG293LV06-38B are available on the database

NT-BG293LV06-37C,NT-BG293LV06-38C:No KD experiments controlled by NT-BG293LV06-37C and NT-BG293LV06-38C are available on the database




Experiment Information (Status: Sequenced)
BG293LV06-37BG293LV06-38
idx00
TRCN#_or_BGC#
shRNA_or_gRNA_sequence
PAM
Namenon-targetnon-target
Sample_IDBG293LV06-37BG293LV06-38
transduction_Date9/5/249/5/24
daysD4D4
RBP_namenon-targetnon-target
qPCR_result
Ave_qPCR
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1012410125




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-37BG293LV06-37BG293LV06-37BG293LV06-38BG293LV06-38BG293LV06-38
Sample_IDBG293LV06-37BG293LV06-37BG293LV06-37BG293LV06-38BG293LV06-38BG293LV06-38
Sample Name
Sample NameNT-BG293LV06-37NT-BG293LV06-37BNT-BG293LV06-37CNT-BG293LV06-38NT-BG293LV06-38BNT-BG293LV06-38C
RBPnon-targetnon-targetnon-targetnon-targetnon-targetnon-target
Cell_Line293T293T293T293T293T293T
Exp UID
StatusSequencedSequencedSequencedSequencedSequencedSequenced
Status_date2024-10-162024-10-162024-10-162024-10-162024-10-162024-10-16
ProjectENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2
Note
ID134741356613574134751356713575




Library-Prep Information
BG293LV06-37BG293LV06-37BG293LV06-37BG293LV06-38BG293LV06-38BG293LV06-38
Sample #3129341304
Sample NameNT-BG293LV06-37NT-BG293LV06-37BNT-BG293LV06-37CNT-BG293LV06-38NT-BG293LV06-38BNT-BG293LV06-38C
Sample_Name_Alias
Index Well PositionC01C01C10D01D01D10
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-10-022024-10-022024-09-252024-10-022024-10-02
Lib_IDLib-240925BLib-241002Lib-241002Lib-240925BLib-241002Lib-241002
Tecan_Location
Tecan
Tecan_date
Size_bp291271298283274293
Peak_Molarity71.9077.9099.3094.70104.0085.40
libSampleQC_DNA_WellDNA_Library_set71/set1/C1.pngDNA_Library_set72/set1/C1.pngDNA_Library_set72/set1/C1.pngDNA_Library_set71/set1/D1.pngDNA_Library_set72/set1/D1.pngDNA_Library_set72/set1/D1.png
RIN10.010.010.010.09.99.9
libSample_RNA_WellRNA_Library_set71/set1/C1.pngRNA_Library_set72/set1/C1.pngRNA_Library_set72/set1/C1.pngRNA_Library_set71/set1/D1.pngRNA_Library_set72/set1/D1.pngRNA_Library_set72/set1/D1.png
SampleQC_methodTapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-10-042024-10-042024-09-302024-10-042024-10-04
Sample_IDBG293LV06-37BG293LV06-37BG293LV06-37BG293LV06-38BG293LV06-38BG293LV06-38
RBPNTNTNTNTNTNT
Batch_IDBG293LV06BG293LV06BG293LV06BG293LV06BG293LV06BG293LV06
WB_result0.0000.0000.0000.0000.0000.000
Library DescriptionTruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNATruSeq mRNA
Repeat_Library_SuffixBCBC
Lib_StatusSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequenceSendToSequence
ProjectENCORE2ENCORE2ENCORE2ENCORE2ENCORE2ENCORE2
ID442845544562442945554563




Sequencing Information
BG293LV06-37BG293LV06-37BG293LV06-37BG293LV06-38BG293LV06-38BG293LV06-38
Sample_IDBG293LV06-37BG293LV06-37BG293LV06-37BG293LV06-38BG293LV06-38BG293LV06-38
Sample NameNT-BG293LV06-37NT-BG293LV06-37BNT-BG293LV06-37CNT-BG293LV06-38NT-BG293LV06-38BNT-BG293LV06-38C
Pool IDPool-240930Pool-241004Pool-241004Pool-240930Pool-241004Pool-241004
LocalServer_folderset71set72set72set71set72set72
total_reads21,073,53415,053,32423,031,11128,953,57231,448,39725,050,664
total_aligned_reads18,502,16212,126,68021,459,81226,103,05028,146,44423,329,909
unique_aligned_reads17,339,37411,277,89419,952,40224,334,15626,226,03021,652,874
percent_uniqueAligned0.822800.749200.866320.840450.833940.86436
correlation_replicates0.9470030.9959180.9918450.9470030.9959180.991845
spikein_reads61,27415,80255,95494,90875,40646,392
percent_spikeins0.002910.001050.002430.003280.002400.00185
original_ReadLength101101101101101101
QC_StatusReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmitReadyToSubmit
ID299731233131299831243132




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database