ENCORE eCLIP:743

Experiment Information (Status: Released)

	743	743-control
Exp_UID	743	743
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR685AUR	ENCSR624CUX
ENCODE_alias	gene-yeo:743	gene-yeo:743-control
RBP	ZNF800	ZNF800
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB214KLU	ENCAB214KLU
Antibody	A303-283A	A303-283A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE4	ENCODE4
ID	425	480

Replicate Information


Rep_UID	743_01	743_02	743_INPUT
Exp UID	743	743	743
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB475YKU	ENCLB500ATO	ENCLB741VUQ
ENCODE_alias	gene-yeo:743_01	gene-yeo:743_02	gene-yeo:743_INPUT
Biosample Name	HepG2_102015	HepG2_062716	HepG2_102015
Biosample_ENCODE_Accession	ENCBS575NGC	ENCBS768GCL	ENCBS575NGC
Biosample_ENCODE_Alias	gene-yeo:HepG2_102015	gene-yeo:HepG2_062716	gene-yeo:HepG2_102015
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-10-20	2016-06-27	2015-10-20
Culture_End_Date	2015-11-17	2016-07-25	2015-11-17
Passage	4	3	4

QC Stats

Experiment QC

	743	743-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	743_01	743_02	743_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	743_01	743_02	743_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A01	C01	none
inline_barcode_2	B06	D08fixed	none
i5_barcode	506	506	505
i7_barcode	704	704	703

Sequencing Information


Rep_UID	743_01	743_02	743_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

FASTQ

file_name	Sample ID	file_format	output_type	run_type	paired_end	read_length	platform	assay_type
743_01_ZNF800.R1.fastq.gz	743_01	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
743_01_ZNF800.R2.fastq.gz	743_01	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
743_02_ZNF800.R1.fastq.gz	743_02	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
743_02_ZNF800.R2.fastq.gz	743_02	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
743_INPUT_ZNF800.R1.fastq.gz	743_INPUT	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
743_INPUT_ZNF800.R2.fastq.gz	743_INPUT	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly
GRCh38/743.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	743	final_peaks	peaks	eCLIP	GRCh38
GRCh38_743_01_ZNF800.merged.bam	743_01	bam	alignments	eCLIP	GRCh38
GRCh38_743_01_ZNF800.merged.r2.norm.neg.bw	743_01	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_743_01_ZNF800.merged.r2.norm.pos.bw	743_01	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/743_01.basedon_743_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	743_01	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/743_01.basedon_743_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	743_01	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_743_02_ZNF800.merged.bam	743_02	bam	alignments	eCLIP	GRCh38
GRCh38_743_02_ZNF800.merged.r2.norm.neg.bw	743_02	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_743_02_ZNF800.merged.r2.norm.pos.bw	743_02	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/743_02.basedon_743_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	743_02	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/743_02.basedon_743_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	743_02	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_743_INPUT_S6_L001_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	743_INPUT	bam	alignments	eCLIP	GRCh38
GRCh38_743_INPUT_S6_L001_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	743_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_743_INPUT_S6_L001_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	743_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly
743.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	743	final_peaks	peaks	eCLIP	hg19
743_01_ZNF800.merged.bam	743_01	bam	alignments	eCLIP	hg19
743_01_ZNF800.merged.r2.norm.neg.bw	743_01	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
743_01_ZNF800.merged.r2.norm.pos.bw	743_01	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
743_01.basedon_743_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	743_01	bed_eCLIP	peaks	eCLIP	hg19
743_01.basedon_743_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	743_01	bigBed_eCLIP	peaks	eCLIP	hg19
743_02_ZNF800.merged.bam	743_02	bam	alignments	eCLIP	hg19
743_02_ZNF800.merged.r2.norm.neg.bw	743_02	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
743_02_ZNF800.merged.r2.norm.pos.bw	743_02	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
743_02.basedon_743_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	743_02	bed_eCLIP	peaks	eCLIP	hg19
743_02.basedon_743_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	743_02	bigBed_eCLIP	peaks	eCLIP	hg19
743_INPUT_S6_L001_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	743_INPUT	bam	alignments	eCLIP	hg19
743_INPUT_S6_L001_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	743_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
743_INPUT_S6_L001_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	743_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=743)