ENCORE eCLIP:713

Experiment Information (Status: Released)

	713	713-control
Exp_UID	713	713
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR973HOJ	ENCSR592ESN
ENCODE_alias	gene-yeo:713	gene-yeo:713-control
RBP	SRSF5	SRSF5
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB069PGU	ENCAB069PGU
Antibody	A303-894A	A303-894A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE4	ENCODE4
ID	413	468

Replicate Information


Rep_UID	713_01	713_02	713_INPUT
Exp UID	713	713	713
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB712LWB	ENCLB886IVQ	ENCLB836TPS
ENCODE_alias	gene-yeo:713_01	gene-yeo:713_02	gene-yeo:713_INPUT
Biosample Name	HepG2_012016	HepG2_102015	HepG2_012016
Biosample_ENCODE_Accession	ENCBS074YUC	ENCBS575NGC	ENCBS074YUC
Biosample_ENCODE_Alias	gene-yeo:HepG2_012016	gene-yeo:HepG2_102015	gene-yeo:HepG2_012016
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2016-01-20	2015-10-20	2016-01-20
Culture_End_Date	2016-02-17	2015-11-17	2016-02-17
Passage	4	4	4

QC Stats

Experiment QC

	713	713-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	713_01	713_02	713_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	713_01	713_02	713_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	502	502	501
i7_barcode	703	703	704

Sequencing Information


Rep_UID	713_01	713_02	713_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

FASTQ

file_name	Sample ID	file_format	output_type	run_type	paired_end	read_length	platform	assay_type
713_01_FXR2.R1.fastq.gz	713_01	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
713_01_FXR2.R2.fastq.gz	713_01	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
713_02_FXR2.R1.fastq.gz	713_02	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
713_02_FXR2.R2.fastq.gz	713_02	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
713_INPUT_FXR2.R1.fastq.gz	713_INPUT	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
713_INPUT_FXR2.R2.fastq.gz	713_INPUT	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly
GRCh38/713.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	713	final_peaks	peaks	eCLIP	GRCh38
GRCh38_713_01_FXR2.merged.bam	713_01	bam	alignments	eCLIP	GRCh38
GRCh38_713_01_FXR2.merged.r2.norm.neg.bw	713_01	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_713_01_FXR2.merged.r2.norm.pos.bw	713_01	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/713_01.basedon_713_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	713_01	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/713_01.basedon_713_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	713_01	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_713_02_FXR2.merged.bam	713_02	bam	alignments	eCLIP	GRCh38
GRCh38_713_02_FXR2.merged.r2.norm.neg.bw	713_02	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_713_02_FXR2.merged.r2.norm.pos.bw	713_02	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/713_02.basedon_713_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	713_02	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/713_02.basedon_713_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	713_02	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_713_INPUT_S10_L003_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	713_INPUT	bam	alignments	eCLIP	GRCh38
GRCh38_713_INPUT_S10_L003_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	713_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_713_INPUT_S10_L003_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	713_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly
713.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	713	final_peaks	peaks	eCLIP	hg19
713_01_FXR2.merged.bam	713_01	bam	alignments	eCLIP	hg19
713_01_FXR2.merged.r2.norm.neg.bw	713_01	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
713_01_FXR2.merged.r2.norm.pos.bw	713_01	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
713_01.basedon_713_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	713_01	bed_eCLIP	peaks	eCLIP	hg19
713_01.basedon_713_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	713_01	bigBed_eCLIP	peaks	eCLIP	hg19
713_02_FXR2.merged.bam	713_02	bam	alignments	eCLIP	hg19
713_02_FXR2.merged.r2.norm.neg.bw	713_02	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
713_02_FXR2.merged.r2.norm.pos.bw	713_02	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
713_02.basedon_713_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	713_02	bed_eCLIP	peaks	eCLIP	hg19
713_02.basedon_713_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	713_02	bigBed_eCLIP	peaks	eCLIP	hg19
713_INPUT_S10_L003_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	713_INPUT	bam	alignments	eCLIP	hg19
713_INPUT_S10_L003_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	713_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
713_INPUT_S10_L003_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	713_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=713)