ENCORE eCLIP:712

Experiment Information (Status: Released)

	712	712-control
Exp_UID	712	712
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR721HPX	ENCSR907EBB
ENCODE_alias	gene-yeo:712	gene-yeo:712-control
RBP	G3BP1	G3BP1
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB411RDE	ENCAB411RDE
Antibody	RN048PW	RN048PW
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE4	ENCODE4
ID	412	467

Replicate Information


Rep_UID	712_01	712_02	712_INPUT
Exp UID	712	712	712
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB423EQB	ENCLB423UHX	ENCLB772YTI
ENCODE_alias	gene-yeo:712_01	gene-yeo:712_02	gene-yeo:712_INPUT
Biosample Name	HepG2_012016	HepG2_102015	HepG2_012016
Biosample_ENCODE_Accession	ENCBS074YUC	ENCBS575NGC	ENCBS074YUC
Biosample_ENCODE_Alias	gene-yeo:HepG2_012016	gene-yeo:HepG2_102015	gene-yeo:HepG2_012016
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2016-01-20	2015-10-20	2016-01-20
Culture_End_Date	2016-02-17	2015-11-17	2016-02-17
Passage	4	4	4

QC Stats

Experiment QC

	712	712-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	712_01	712_02	712_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	712_01	712_02	712_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	501	501	502
i7_barcode	703	703	704

Sequencing Information


Rep_UID	712_01	712_02	712_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

FASTQ

file_name	Sample ID	file_format	output_type	run_type	paired_end	read_length	platform	assay_type
712_01_G3BP1.R1.fastq.gz	712_01	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
712_01_G3BP1.R2.fastq.gz	712_01	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
712_02_G3BP1.R1.fastq.gz	712_02	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
712_02_G3BP1.R2.fastq.gz	712_02	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
712_INPUT_G3BP1.R1.fastq.gz	712_INPUT	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
712_INPUT_G3BP1.R2.fastq.gz	712_INPUT	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly
GRCh38/712.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	712	final_peaks	peaks	eCLIP	GRCh38
GRCh38_712_01_G3BP1.merged.bam	712_01	bam	alignments	eCLIP	GRCh38
GRCh38_712_01_G3BP1.merged.r2.norm.neg.bw	712_01	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_712_01_G3BP1.merged.r2.norm.pos.bw	712_01	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/712_01.basedon_712_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	712_01	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/712_01.basedon_712_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	712_01	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_712_02_G3BP1.merged.bam	712_02	bam	alignments	eCLIP	GRCh38
GRCh38_712_02_G3BP1.merged.r2.norm.neg.bw	712_02	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_712_02_G3BP1.merged.r2.norm.pos.bw	712_02	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/712_02.basedon_712_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	712_02	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/712_02.basedon_712_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	712_02	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_712_INPUT_S57_L006_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	712_INPUT	bam	alignments	eCLIP	GRCh38
GRCh38_712_INPUT_S57_L006_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	712_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_712_INPUT_S57_L006_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	712_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly
712.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	712	final_peaks	peaks	eCLIP	hg19
712_01_G3BP1.merged.bam	712_01	bam	alignments	eCLIP	hg19
712_01_G3BP1.merged.r2.norm.neg.bw	712_01	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
712_01_G3BP1.merged.r2.norm.pos.bw	712_01	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
712_01.basedon_712_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	712_01	bed_eCLIP	peaks	eCLIP	hg19
712_01.basedon_712_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	712_01	bigBed_eCLIP	peaks	eCLIP	hg19
712_02_G3BP1.merged.bam	712_02	bam	alignments	eCLIP	hg19
712_02_G3BP1.merged.r2.norm.neg.bw	712_02	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
712_02_G3BP1.merged.r2.norm.pos.bw	712_02	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
712_02.basedon_712_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	712_02	bed_eCLIP	peaks	eCLIP	hg19
712_02.basedon_712_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	712_02	bigBed_eCLIP	peaks	eCLIP	hg19
712_INPUT_S57_L006_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	712_INPUT	bam	alignments	eCLIP	hg19
712_INPUT_S57_L006_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	712_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
712_INPUT_S57_L006_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	712_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=712)