ENCORE eCLIP:696

PTBP1 eCLIP in HepG2

Experiment Information (Status: Released)

	696	696-control
Exp_UID	696	696
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR384KAN	ENCSR438NCK
ENCODE_alias	gene-yeo:696	gene-yeo:696-control
RBP	PTBP1	PTBP1
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB553IRN	ENCAB553IRN
Antibody	RN011P	RN011P
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	355	378

Replicate Information


Rep_UID	695_01	695_02	695_INPUT
Exp UID	696	696	696
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB985KTR	ENCLB984MLU	ENCLB378XHY
ENCODE_alias	gene-yeo:695_01	gene-yeo:695_02	gene-yeo:695_INPUT
Biosample Name	HepG2_012016	HepG2_102015	HepG2_012016
Biosample_ENCODE_Accession	ENCBS074YUC	ENCBS575NGC	ENCBS074YUC
Biosample_ENCODE_Alias	gene-yeo:HepG2_012016	gene-yeo:HepG2_102015	gene-yeo:HepG2_012016
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2016-01-20	2015-10-20	2016-01-20
Culture_End_Date	2016-02-17	2015-11-17	2016-02-17
Passage	4	4	4

QC Stats

Experiment QC

	696	696-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	695_01	695_02	695_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	695_01	695_02	695_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	505	505	506
i7_barcode	704	704	703

Sequencing Information


Rep_UID	695_01	695_02	695_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/696.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	696	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
696.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	696	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4161_CLIP1_rep1.vs.4161_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF663WYH	file_finalPeaks	eCLIP	4161	Released	ENCODE4
gene-yeo:4104_CLIP1_rep1.vs.4104_CLIP2_rep2.sorted.nh.bb	ENCFF411DGR	file_finalPeaks_bb	eCLIP	4161	Released	ENCODE4
gene-yeo:4140_CLIP1_rep1.vs.4140_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF312VDN	file_finalPeaks	eCLIP	4140	Released	ENCODE4
gene-yeo:4108_CLIP1_rep1.vs.4108_CLIP2_rep2.sorted.nh.bb	ENCFF510GOC	file_finalPeaks_bb	eCLIP	4140	Released	ENCODE4