ENCORE eCLIP:695

MATR3 eCLIP in HepG2

Experiment Information (Status: Released)

	695	695-control
Exp_UID	695	695
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR290VLT	ENCSR438XYI
ENCODE_alias	gene-yeo:695	gene-yeo:695-control
RBP	MATR3	MATR3
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB789SRM	ENCAB789SRM
Antibody	ab151714	ab151714
Lot_num	GR108745-9	GR108745-9
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	354	377

Replicate Information


Rep_UID	693_01	693_02	693_INPUT
Exp UID	695	695	695
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB537XZW	ENCLB055QBA	ENCLB310QWF
ENCODE_alias	gene-yeo:693_01	gene-yeo:693_02	gene-yeo:693_INPUT
Biosample Name	K562_081815	K562_012016	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS039CVO	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_012016	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2016-01-20	2015-08-18
Culture_End_Date	2015-09-08	2016-02-17	2015-09-08
Passage	5	5	5

QC Stats

Experiment QC

	695	695-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	693_01	693_02	693_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	693_01	693_02	693_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	502	502	501
i7_barcode	705	705	706

Sequencing Information


Rep_UID	693_01	693_02	693_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/695.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	695	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
695.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	695	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4160_CLIP1_rep1.vs.4160_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF520QYX	file_finalPeaks	eCLIP	4160	Released	ENCODE4
gene-yeo:4098_CLIP1_rep1.vs.4098_CLIP2_rep2.sorted.nh.bb	ENCFF329CEE	file_finalPeaks_bb	eCLIP	4160	Released	ENCODE4