ENCORE eCLIP:693

SERBP1 eCLIP in K562

Experiment Information (Status: Released)

	693	693-control
Exp_UID	693	693
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR121GQH	ENCSR752YLF
ENCODE_alias	gene-yeo:693	gene-yeo:693-control
RBP	SERBP1	SERBP1
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB229RIQ	ENCAB229RIQ
Antibody	RN056PW	RN056PW
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	353	376

Replicate Information


Rep_UID	684_01	684_02	684_INPUT
Exp UID	693	693	693
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB764ZKN	ENCLB791LSC	ENCLB938FOD
ENCODE_alias	gene-yeo:684_01	gene-yeo:684_02	gene-yeo:684_INPUT
Biosample Name	K562_091615	K562_012016	K562_091615
Biosample_ENCODE_Accession	ENCBS505ILK	ENCBS039CVO	ENCBS505ILK
Biosample_ENCODE_Alias	gene-yeo:K562_091615	gene-yeo:K562_012016	gene-yeo:K562_091615
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-09-16	2016-01-20	2015-09-16
Culture_End_Date	2015-10-14	2016-02-17	2015-10-14
Passage	4	5	4

QC Stats

Experiment QC

	693	693-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	684_01	684_02	684_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	684_01	684_02	684_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	503	503	504
i7_barcode	702	702	701

Sequencing Information


Rep_UID	684_01	684_02	684_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/693.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	693	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
693.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	693	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4142_CLIP1_rep1.vs.4142_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF389PHE	file_finalPeaks	eCLIP	4142	Released	ENCODE4
gene-yeo:4083_CLIP1_rep1.vs.4083_CLIP2_rep2.sorted.nh.bb	ENCFF055AZF	file_finalPeaks_bb	eCLIP	4142	Released	ENCODE4
gene-yeo:4187_CLIP1_rep1.vs.4187_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF570OUX	file_finalPeaks	eCLIP	4187	Released	ENCODE4
gene-yeo:4084_CLIP1_rep1.vs.4084_CLIP2_rep2.sorted.nh.bb	ENCFF232IQK	file_finalPeaks_bb	eCLIP	4187	Released	ENCODE4