ENCORE eCLIP:689

Experiment Information (Status: Released)

	689	689-control
Exp_UID	689	689
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR069EVH	ENCSR389ISM
ENCODE_alias	gene-yeo:689	gene-yeo:689-control
RBP	FUS	FUS
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB598VSJ	ENCAB598VSJ
Antibody	A300-294A	A300-294A
Lot_num	2	2
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE4	ENCODE4
ID	403	458

Replicate Information


Rep_UID	689_01	689_02	689_INPUT
Exp UID	689	689	689
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB042TSY	ENCLB861HQF	ENCLB976AKI
ENCODE_alias	gene-yeo:689_01	gene-yeo:689_02	gene-yeo:689_INPUT
Biosample Name	K562_012016	K562_091615	K562_012016
Biosample_ENCODE_Accession	ENCBS039CVO	ENCBS505ILK	ENCBS039CVO
Biosample_ENCODE_Alias	gene-yeo:K562_012016	gene-yeo:K562_091615	gene-yeo:K562_012016
Cell_Line	K562	K562	K562
Culture_Start_Date	2016-01-20	2015-09-16	2016-01-20
Culture_End_Date	2016-02-17	2015-10-14	2016-02-17
Passage	5	4	5

QC Stats

Experiment QC

	689	689-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	689_01	689_02	689_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	689_01	689_02	689_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	A03	A04	none
inline_barcode_2	G07	F05	none
i5_barcode	504	504	503
i7_barcode	704	704	703

Sequencing Information


Rep_UID	689_01	689_02	689_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

FASTQ

file_name	Sample ID	file_format	output_type	run_type	paired_end	read_length	platform	assay_type
689_01_FUS.R1.fastq.gz	689_01	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
689_01_FUS.R2.fastq.gz	689_01	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
689_02_FUS.R1.fastq.gz	689_02	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
689_02_FUS.R2.fastq.gz	689_02	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP
689_INPUT_FUS.R1.fastq.gz	689_INPUT	fastq	reads	paired-ended	1	50	HiSeq4000	eCLIP
689_INPUT_FUS.R2.fastq.gz	689_INPUT	fastq	reads	paired-ended	2	50	HiSeq4000	eCLIP

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly
GRCh38/689.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	689	final_peaks	peaks	eCLIP	GRCh38
GRCh38_689_01_FUS.merged.bam	689_01	bam	alignments	eCLIP	GRCh38
GRCh38_689_01_FUS.merged.r2.norm.neg.bw	689_01	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_689_01_FUS.merged.r2.norm.pos.bw	689_01	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/689_01.basedon_689_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	689_01	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/689_01.basedon_689_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	689_01	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_689_02_FUS.merged.bam	689_02	bam	alignments	eCLIP	GRCh38
GRCh38_689_02_FUS.merged.r2.norm.neg.bw	689_02	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_689_02_FUS.merged.r2.norm.pos.bw	689_02	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38
GRCh38/689_02.basedon_689_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	689_02	bed_eCLIP	peaks	eCLIP	GRCh38
GRCh38/689_02.basedon_689_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	689_02	bigBed_eCLIP	peaks	eCLIP	GRCh38
GRCh38_689_INPUT_S20_L002_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	689_INPUT	bam	alignments	eCLIP	GRCh38
GRCh38_689_INPUT_S20_L002_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	689_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	GRCh38
GRCh38_689_INPUT_S20_L002_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	689_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly
689.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	689	final_peaks	peaks	eCLIP	hg19
689_01_FUS.merged.bam	689_01	bam	alignments	eCLIP	hg19
689_01_FUS.merged.r2.norm.neg.bw	689_01	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
689_01_FUS.merged.r2.norm.pos.bw	689_01	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
689_01.basedon_689_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	689_01	bed_eCLIP	peaks	eCLIP	hg19
689_01.basedon_689_01.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	689_01	bigBed_eCLIP	peaks	eCLIP	hg19
689_02_FUS.merged.bam	689_02	bam	alignments	eCLIP	hg19
689_02_FUS.merged.r2.norm.neg.bw	689_02	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
689_02_FUS.merged.r2.norm.pos.bw	689_02	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19
689_02.basedon_689_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.encode.bed.gz	689_02	bed_eCLIP	peaks	eCLIP	hg19
689_02.basedon_689_02.peaks.l2inputnormnew.bed.compressed.bed.narrowPeak.bed.bb	689_02	bigBed_eCLIP	peaks	eCLIP	hg19
689_INPUT_S20_L002_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.bam	689_INPUT	bam	alignments	eCLIP	hg19
689_INPUT_S20_L002_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.neg.bw	689_INPUT	bigWig-unique	minus strand signal of unique reads	eCLIP	hg19
689_INPUT_S20_L002_R1_001.unassigned.adapterTrim.round2.rmRep.rmDup.sorted.r2.norm.pos.bw	689_INPUT	bigWig+unique	plus strand signal of unique reads	eCLIP	hg19

Data Submission Information No DCC registered objects are available for eCLIP experiment (Exp_UID=689)