ENCORE eCLIP:684

ZC3H11A eCLIP in K562

Experiment Information (Status: Released)

	684	684-control
Exp_UID	684	684
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR712IAG	ENCSR321GBR
ENCODE_alias	gene-yeo:684	gene-yeo:684-control
RBP	ZC3H11A	ZC3H11A
Cell_Line	K562	K562
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB686PBA	ENCAB686PBA
Antibody	A301-524A	A301-524A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	352	375

Replicate Information


Rep_UID	682_01	682_02	682_INPUT
Exp UID	684	684	684
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB709RHI	ENCLB948HJW	ENCLB808KPU
ENCODE_alias	gene-yeo:682_01	gene-yeo:682_02	gene-yeo:682_INPUT
Biosample Name	K562_070715	K562_012016	K562_070715
Biosample_ENCODE_Accession	ENCBS517UIR	ENCBS039CVO	ENCBS517UIR
Biosample_ENCODE_Alias	gene-yeo:K562_070715	gene-yeo:K562_012016	gene-yeo:K562_070715
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-07-07	2016-01-20	2015-07-07
Culture_End_Date	2015-08-04	2016-02-17	2015-08-04
Passage	5	5	5

QC Stats

Experiment QC

	684	684-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	682_01	682_02	682_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	682_01	682_02	682_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	505	505	506
i7_barcode	706	706	705

Sequencing Information


Rep_UID	682_01	682_02	682_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/684.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	684	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
684.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	684	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4149_CLIP1_rep1.vs.4149_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF433QSY	file_finalPeaks	eCLIP	4149	Released	ENCODE4
gene-yeo:4082_CLIP1_rep1.vs.4082_CLIP2_rep2.sorted.nh.bb	ENCFF045QVU	file_finalPeaks_bb	eCLIP	4149	Released	ENCODE4