ENCORE eCLIP:679

RPL23A eCLIP in HepG2

Experiment Information (Status: Revoked)

	679	679-control
Exp_UID	679	679
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR199MEI	ENCSR224ECB
ENCODE_alias	gene-yeo:679	gene-yeo:679-control-control
RBP	RPL23A	RPL23A
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB435MHD	ENCAB435MHD
Antibody	A303-932A	A303-932A
Lot_num	1	1
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Revoked	Revoked
Project	ENCODE3	ENCODE3
ID	350	373

Replicate Information


Rep_UID	678_01	678_02	678_INPUT
Exp UID	679	679	679
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB151JKR	ENCLB220YZM	ENCLB590PCH
ENCODE_alias	gene-yeo:678_01	gene-yeo:678_02	gene-yeo:678_INPUT
Biosample Name	HepG2_061215	HepG2_091615	HepG2_061215
Biosample_ENCODE_Accession	ENCBS308ZPA	ENCBS621TAB	ENCBS308ZPA
Biosample_ENCODE_Alias	gene-yeo:HepG2_061215	gene-yeo:HepG2_091615	gene-yeo:HepG2_061215
Cell_Line	HepG2	HepG2	HepG2
Culture_Start_Date	2015-06-12	2015-09-16	2015-06-12
Culture_End_Date	2015-06-30	2015-10-09	2015-06-30
Passage	3	3	3

QC Stats

Experiment QC

	679	679-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	678_01	678_02	678_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	678_01	678_02	678_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	503	503	504
i7_barcode	706	706	705

Sequencing Information


Rep_UID	678_01	678_02	678_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information No files are available for eCLIP experiment (Exp_UID=)679

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4152_CLIP1_rep1.vs.4152_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF863SUL	file_finalPeaks	eCLIP	4152	Released	ENCODE4
gene-yeo:4056_CLIP1_rep1.vs.4056_CLIP2_rep2.sorted.nh.bb	ENCFF178XWA	file_finalPeaks_bb	eCLIP	4152	Released	ENCODE4