ENCORE eCLIP:678

HNRNPL eCLIP in HepG2

Experiment Information (Status: Released)

	678	678-control
Exp_UID	678	678
RBPARK_Exp_name
ENCODE_ACCESSION	ENCSR724RDN	ENCSR513UTE
ENCODE_alias	gene-yeo:678	gene-yeo:678-control
RBP	HNRNPL	HNRNPL
Cell_Line	HepG2	HepG2
Batch
Exp_type	eCLIP	control
ENCODE_Antibody_ID	ENCAB734ADP	ENCAB734ADP
Antibody	ab6106	ab6106
Lot_num	GR30383-24	GR30383-24
crosslinking_method	ultraviolet irradiation	ultraviolet irradiation
queried_RNP_size_range	175-300	175-300
Self_consistency_hg38
rescue_GRCh38
Status	Released	Released
Project	ENCODE3	ENCODE3
ID	349	372

Replicate Information


Rep_UID	677_01	677_02	677_INPUT
Exp UID	678	678	678
Replicate_type	rep1	rep2	control
ENCODE_ACCESSION	ENCLB146KYP	ENCLB789HGL	ENCLB574FHH
ENCODE_alias	gene-yeo:677_01	gene-yeo:677_02	gene-yeo:677_INPUT
Biosample Name	K562_081815	K562_091615	K562_081815
Biosample_ENCODE_Accession	ENCBS175JIH	ENCBS505ILK	ENCBS175JIH
Biosample_ENCODE_Alias	gene-yeo:K562_081815	gene-yeo:K562_091615	gene-yeo:K562_081815
Cell_Line	K562	K562	K562
Culture_Start_Date	2015-08-18	2015-09-16	2015-08-18
Culture_End_Date	2015-09-08	2015-10-14	2015-09-08
Passage	5	4	5

QC Stats

Experiment QC

	678	678-control
Self_consistency_hg38
rescue_GRCh38

Replicate QC


Rep_UID	677_01	677_02	677_INPUT
eCT
Usable_reads
Entropy_hg38

Library-Prep
Sequencing

Library-Prep Information


Rep_UID	677_01	677_02	677_INPUT
library_size_selection_method	agarose gel extraction	agarose gel extraction	agarose gel extraction
strand_specificity	reverse	reverse	reverse
inline_barcode_1	X1A	X2A	none
inline_barcode_2	X1B	X2B	none
i5_barcode	504	504	503
i7_barcode	706	706	705

Sequencing Information


Rep_UID	677_01	677_02	677_INPUT
seq_read_type	paired-ended	paired-ended	paired-ended
read_length	50	50	50
machine
flowcell
lane

File Information

GRCh38

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
GRCh38/678.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	678	final_peaks	peaks	eCLIP	GRCh38

hg19

file_name	Sample ID	file_format	output_type	assay_type	assembly	genome_annotation	Note
678.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz	678	final_peaks	peaks	eCLIP	hg19

Data Submission Information

Files

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	Status	Project
gene-yeo:4138_CLIP1_rep1.vs.4138_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF434SMG	file_finalPeaks	eCLIP	4138	Released	ENCODE4
gene-yeo:4047_CLIP1_rep1.vs.4047_CLIP2_rep2.sorted.nh.bb	ENCFF381XXX	file_finalPeaks_bb	eCLIP	4138	Released	ENCODE4
gene-yeo:4169_CLIP1_rep1.vs.4169_CLIP2_rep2.sorted.nh.narrowPeak.gz	ENCFF335TZG	file_finalPeaks	eCLIP	4169	Released	ENCODE4
gene-yeo:4050_CLIP1_rep1.vs.4050_CLIP2_rep2.sorted.nh.bb	ENCFF357XNG	file_finalPeaks_bb	eCLIP	4169	Released	ENCODE4